Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,560,576 – 17,560,696 |
Length | 120 |
Max. P | 0.972741 |
Location | 17,560,576 – 17,560,696 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.13 |
Mean single sequence MFE | -20.53 |
Consensus MFE | -14.25 |
Energy contribution | -16.03 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.80 |
Structure conservation index | 0.69 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17560576 120 + 23771897 AACAUUAAUUAAAACAUUUUAAAAUCUUAAAUUAGCUUCAAAGAUCUUUGAGCCUCAAAGUAUGCAAUAAUAUACUUCCAAAUUAAAACCCUUUUGAACCGUGAGAUCUCACUGCUCACA ........((((((..((((((............(((.((((....)))))))....(((((((......))))))).....))))))...))))))...(((((.........))))). ( -16.30) >DroSec_CAF1 46147 107 + 1 -------------ACAUUUUAAAAUUCUAAAUCAGCUUCAAAUAUCUUUGAGCCUCAAAGUAUGCAAUGAUUUAUUUUCAAAUGAAAAUCCUUUUGAACUGUGAGAUCUCACGGUUCAAA -------------.(((((.((((...(((((((.......(((.(((((.....))))))))....))))))))))).)))))........((((((((((((....)))))))))))) ( -27.00) >DroSim_CAF1 49669 107 + 1 -------------AAAUUGUAAAAUCUUAAAUCAGCUUCAAAUAUCUUUGAGCCCCAAAGUAUGCAAUGAUAUAUUUUCAAAUGAAAAUCCUUUUGAACUGUAAGAUCUCACGGUUCAAA -------------..((((((....(((......(((.((((....)))))))....)))..)))))).....((((((....))))))...((((((((((........)))))))))) ( -18.30) >consensus _____________ACAUUUUAAAAUCUUAAAUCAGCUUCAAAUAUCUUUGAGCCUCAAAGUAUGCAAUGAUAUAUUUUCAAAUGAAAAUCCUUUUGAACUGUGAGAUCUCACGGUUCAAA ..................................(((.((((....)))))))...((((((((......))))))))..............((((((((((((....)))))))))))) (-14.25 = -16.03 + 1.78)
Location | 17,560,576 – 17,560,696 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.13 |
Mean single sequence MFE | -24.77 |
Consensus MFE | -19.14 |
Energy contribution | -17.93 |
Covariance contribution | -1.21 |
Combinations/Pair | 1.23 |
Mean z-score | -1.99 |
Structure conservation index | 0.77 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851745 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17560576 120 - 23771897 UGUGAGCAGUGAGAUCUCACGGUUCAAAAGGGUUUUAAUUUGGAAGUAUAUUAUUGCAUACUUUGAGGCUCAAAGAUCUUUGAAGCUAAUUUAAGAUUUUAAAAUGUUUUAAUUAAUGUU ..(((((.((((....)))).)))))((((.(((((((..(.(((((((........))))))).)((((((((....)))).))))...........))))))).)))).......... ( -26.00) >DroSec_CAF1 46147 107 - 1 UUUGAACCGUGAGAUCUCACAGUUCAAAAGGAUUUUCAUUUGAAAAUAAAUCAUUGCAUACUUUGAGGCUCAAAGAUAUUUGAAGCUGAUUUAGAAUUUUAAAAUGU------------- (((((((.((((....)))).)))))))..........(((((((.((((((....((.....)).((((((((....)))).))))))))))...)))))))....------------- ( -23.80) >DroSim_CAF1 49669 107 - 1 UUUGAACCGUGAGAUCUUACAGUUCAAAAGGAUUUUCAUUUGAAAAUAUAUCAUUGCAUACUUUGGGGCUCAAAGAUAUUUGAAGCUGAUUUAAGAUUUUACAAUUU------------- ........((((((((((((((((((((...((((((....)))))).............(((((.....)))))...)))).)))))...))))))))))).....------------- ( -24.50) >consensus UUUGAACCGUGAGAUCUCACAGUUCAAAAGGAUUUUCAUUUGAAAAUAUAUCAUUGCAUACUUUGAGGCUCAAAGAUAUUUGAAGCUGAUUUAAGAUUUUAAAAUGU_____________ (((((((.((((....)))).)))))))((((((((..............(((..(....)..)))((((((((....)))).)))).....)))))))).................... (-19.14 = -17.93 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:34 2006