Locus 6606

Sequence ID 3L_DroMel_CAF1
Location 17,551,250 – 17,551,344
Length 94
Max. P 0.659459
window10753

overview

Window 3

Location 17,551,250 – 17,551,344
Length 94
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 81.07
Mean single sequence MFE -22.69
Consensus MFE -11.38
Energy contribution -12.55
Covariance contribution 1.17
Combinations/Pair 1.00
Mean z-score -2.50
Structure conservation index 0.50
SVM decision value 0.26
SVM RNA-class probability 0.659459
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17551250 94 - 23771897
GCAUGCCAUGGAAAAUGAAAACUGCCAACUGGC------------AGCGGCAACACUUUCCCUCUCGUUGCUUUCCAUUUGCAGCA---ACAACUUCAUCAUCA---GCAUC
((.(((.(((((((.......(((((....)))------------))..(((((............))))))))))))..))))).---...............---..... ( -25.00)
>DroVir_CAF1 35429 97 - 1
GCAUGCCAUGGAAAAUGAAAACUGCCAAUAGU-GGCAA-----------AAAACACUUUCCCUCUCAUUGCUUUCCAUUUGCAGCAGCAACAACUUCAUC---AUCAACACC
((.(((...(((((.((.....(((((....)-)))).-----------....)).))))).......(((.........))))))))............---......... ( -18.00)
>DroSec_CAF1 36827 86 - 1
GCAUGCCAUGGAAAAUGAAAA--------UGGC------------AGCGGCAACACUUUCCCUCUCGUUGCUUUCCAUUUGCAGCA---ACAACUUCAUAACCA---GCAUC
((.(((.(((((((((....)--------).((------------(((((..............))))))))))))))..))))).---...............---..... ( -18.34)
>DroEre_CAF1 36761 94 - 1
GCAUGCCAUGGAAAAUGAAAACUGCCAACUGGC------------AGCGGCAACACUUUCCCUCUCGUUGCUUUCCAUUUGCAGCA---ACAACUUCAUCAUCA---GCAUC
((.(((.(((((((.......(((((....)))------------))..(((((............))))))))))))..))))).---...............---..... ( -25.00)
>DroYak_CAF1 40440 109 - 1
GCAUGCCAUGGAAAAUGAAAACUGCCAACUGGCAGCAGCAGCGGCAGCGGCAACACUUUCCCUCUCGUUGCUUUCCAUUUGCAGCA---ACAACUUCAUCAUCACCGGCAUC
..(((((..(((((.((....(((((....)))))..((.((....)).))..)).))))).....((((((..........))))---))...............))))). ( -32.10)
>DroPer_CAF1 45511 88 - 1
GCAUGCCAUGGAAAAUGAAAACUGCCAACUGG------------------CAACACUUUCCCUCUCGUUGCUUUCCAUUUGCAGCA---GCAACAACUUCAUCA---UCAUC
...(((...(((((.((.....((((....))------------------)).)).))))).....(((((.........))))).---)))............---..... ( -17.70)
>consensus
GCAUGCCAUGGAAAAUGAAAACUGCCAACUGGC____________AGCGGCAACACUUUCCCUCUCGUUGCUUUCCAUUUGCAGCA___ACAACUUCAUCAUCA___GCAUC
((.(((.(((((((..........((....)).................(((((............))))))))))))..)))))........................... (-11.38 = -12.55 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:31 2006