Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,550,806 – 17,550,899 |
Length | 93 |
Max. P | 0.997583 |
Location | 17,550,806 – 17,550,899 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 76.07 |
Mean single sequence MFE | -23.78 |
Consensus MFE | -9.42 |
Energy contribution | -10.06 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.08 |
Mean z-score | -2.80 |
Structure conservation index | 0.40 |
SVM decision value | 2.89 |
SVM RNA-class probability | 0.997583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17550806 93 + 23771897 GAAAAGUGCACAAAAUAGUGCAACUGCAAUCAAGAAUUGAGGUAGGUUGCAAUCAAAACAU------------GUGAUAUAUUGUGC--------AUCAAAAUGUUG--UAGUUU .....((((((((.....(((((((....(((.....)))....)))))))((((......------------.))))...))))))--------))..........--...... ( -21.60) >DroSec_CAF1 36386 93 + 1 GAAAAAUGCACAAAAUAGUGCAACUGCAAUCAAGAAUUGAGGUAGGUUGCAUUCAAAACAU------------GUGAUAUAUUGUGC--------AUGAAAAUGUUG--UAGUUG .....((((((((.(((((((((((....(((.....)))....))))))))(((......------------.)))))).))))))--------))..........--...... ( -22.10) >DroSim_CAF1 39874 93 + 1 GAAAAAUGCACAAAAUAGUGCAACUGCAAUCAAGAAUUGAGGUAGGUUGCAUUCAAAACAA------------GUGAUAUAUUGUGC--------AUCAAAAUGUUG--UAGUCG .....((((((((.(((((((((((....(((.....)))....))))))))(((......------------.)))))).))))))--------))..........--...... ( -21.50) >DroEre_CAF1 36283 114 + 1 AAGAAACACACUAAAUAGUGGCACUGCAAUCACGAAUUGAGGCAGGUUGUAGGCAAAACAAAUUAAAUUGCUUGCGACAGCCUGUGAUAUCGCACAU-AAAAUGUAGUUUAGUUA .........(((((((...(((.((((..(((.....))).))))(((((((((((...........))))))))))).)))((((....))))...-........))))))).. ( -31.30) >DroYak_CAF1 40015 104 + 1 AAAAAAAACACGAAAUAGUGCAACUGCAAUCAAGAAUUGAGGUAGGUUGCAAUCAAAACAAAUUAAGUUGCCUGUGAUAUGCUGUAA--------AU-AAAGUGUUG--CAGUUG ........(((......)))((((((((((.....(((..((((.((..((.....(((.......)))...))..)).))))...)--------))-.....))))--)))))) ( -22.40) >consensus GAAAAAUGCACAAAAUAGUGCAACUGCAAUCAAGAAUUGAGGUAGGUUGCAAUCAAAACAA____________GUGAUAUAUUGUGC________AU_AAAAUGUUG__UAGUUG ......(((((......)))))..(((((((.............)))))))................................................................ ( -9.42 = -10.06 + 0.64)
Location | 17,550,806 – 17,550,899 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 76.07 |
Mean single sequence MFE | -18.66 |
Consensus MFE | -7.14 |
Energy contribution | -8.14 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.15 |
Mean z-score | -2.43 |
Structure conservation index | 0.38 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17550806 93 - 23771897 AAACUA--CAACAUUUUGAU--------GCACAAUAUAUCAC------------AUGUUUUGAUUGCAACCUACCUCAAUUCUUGAUUGCAGUUGCACUAUUUUGUGCACUUUUC ......--...........(--------((((((.(((...(------------(.....))..((((((.....(((.....))).....)))))).))).)))))))...... ( -15.70) >DroSec_CAF1 36386 93 - 1 CAACUA--CAACAUUUUCAU--------GCACAAUAUAUCAC------------AUGUUUUGAAUGCAACCUACCUCAAUUCUUGAUUGCAGUUGCACUAUUUUGUGCAUUUUUC ......--..........((--------((((((.((((((.------------......))).((((((.....(((.....))).....)))))).))).))))))))..... ( -16.70) >DroSim_CAF1 39874 93 - 1 CGACUA--CAACAUUUUGAU--------GCACAAUAUAUCAC------------UUGUUUUGAAUGCAACCUACCUCAAUUCUUGAUUGCAGUUGCACUAUUUUGUGCAUUUUUC ......--.........(((--------((((((.((((((.------------......))).((((((.....(((.....))).....)))))).))).))))))))).... ( -17.90) >DroEre_CAF1 36283 114 - 1 UAACUAAACUACAUUUU-AUGUGCGAUAUCACAGGCUGUCGCAAGCAAUUUAAUUUGUUUUGCCUACAACCUGCCUCAAUUCGUGAUUGCAGUGCCACUAUUUAGUGUGUUUCUU .....((((.(((((..-(((((((..((((((((((((.((((((((......))).)))))..)))....))))......))))).....)).))).))..)))))))))... ( -22.00) >DroYak_CAF1 40015 104 - 1 CAACUG--CAACACUUU-AU--------UUACAGCAUAUCACAGGCAACUUAAUUUGUUUUGAUUGCAACCUACCUCAAUUCUUGAUUGCAGUUGCACUAUUUCGUGUUUUUUUU ((((((--(((......-..--------.....(((.((((.((((((......)))))))))))))........(((.....))))))))))))(((......)))........ ( -21.00) >consensus CAACUA__CAACAUUUU_AU________GCACAAUAUAUCAC____________UUGUUUUGAAUGCAACCUACCUCAAUUCUUGAUUGCAGUUGCACUAUUUUGUGCAUUUUUC .............................................................((((((((.(.............).))))))))((((......))))....... ( -7.14 = -8.14 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:30 2006