Locus 66

Sequence ID 3L_DroMel_CAF1
Location 257,365 – 257,467
Length 102
Max. P 0.644543
window94

overview

Window 4

Location 257,365 – 257,467
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 94.61
Mean single sequence MFE -24.05
Consensus MFE -21.16
Energy contribution -21.22
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.60
Structure conservation index 0.88
SVM decision value 0.23
SVM RNA-class probability 0.644543
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 257365 102 + 23771897
CAAGUCGGGAUCUAGAAAACUAGUGGUUGCGGAAAAUGGCGGGGCACUGUCAUCACAACUACCACAACCAAAUCACAAGCAAGGCCACAAGAACACUGAUAA
...(((((...((((....))))((((((.((...(((((((....)))))))........)).)))))).........................))))).. ( -23.20)
>DroSec_CAF1 25181 102 + 1
CAAGUCGGGAUCUAGAAAACUAGUGGUUGCGGAAAAUGGCGGGGCACUGUCAUCACAGCUACCACAACCAAAUCACAAACAAGGCCACAAGAACACUGAUAA
...((((((.(((.(.......(((((.((.....(((((((....)))))))....)).)))))..((.............))...).))).).))))).. ( -24.52)
>DroSim_CAF1 25648 102 + 1
CAAGUCGGGAUCUAGAAAACUAGUGGUUGCGGAAAAUGGCGGGGCACUGUCAUCACAGCUACCACAACCAAAUCACAAACAAGGCCACAAGAACACUGAUAA
...((((((.(((.(.......(((((.((.....(((((((....)))))))....)).)))))..((.............))...).))).).))))).. ( -24.52)
>DroYak_CAF1 25364 102 + 1
CAAGUCGGGCACCAGAAAACUAGUGGUUGCGGAAAAUGGCGGAGCACUGUCAUCACAGAUAUCGCAACCAAAUCACAAACAAGGCCACAAAAACGCUGAUAA
.......(((.............(((((((((...(((((((....)))))))........))))))))).............)))................ ( -23.97)
>consensus
CAAGUCGGGAUCUAGAAAACUAGUGGUUGCGGAAAAUGGCGGGGCACUGUCAUCACAGCUACCACAACCAAAUCACAAACAAGGCCACAAGAACACUGAUAA
...(((((...((((....))))((((((.((...(((((((....)))))))........)).)))))).........................))))).. (-21.16 = -21.22 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:27 2006