| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,535,780 – 17,535,870 |
| Length | 90 |
| Max. P | 0.624414 |
| Location | 17,535,780 – 17,535,870 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 92.01 |
| Mean single sequence MFE | -16.24 |
| Consensus MFE | -15.44 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17535780 90 - 23771897 ----GCAAAAACAGAA---AAACAGAAAAUCACACAGAUCGCAACCGAGUCGCGUAUCAUUUCUUAAUGCGGAAAUAUUGAAGAAGAAUUUCUGUUG ----............---.((((((((.((.....((((((.((...)).))).)))((((((......)))))).........)).)))))))). ( -17.80) >DroSec_CAF1 21665 92 - 1 ----GCGAAAACAGAAA-AAAACAGAAAAUCACACAGAUCGCAACCGAGUCGCGUAUCAUUUCUUAAUGCGGAAAUAUUGAAGAAGAAUUUCUGUUG ----.............-..((((((((.((.....((((((.((...)).))).)))((((((......)))))).........)).)))))))). ( -17.80) >DroSim_CAF1 23554 93 - 1 ----GCAAAAACAGAAAAAAAACAGAAAAUCACACAGAUCGCAACCGAGUCGCGUAUCAUUUCUUAAUGCGGAAAUAUUGAAGAAGAAUUUCUGUUG ----................((((((((.((.....((((((.((...)).))).)))((((((......)))))).........)).)))))))). ( -17.80) >DroEre_CAF1 21561 85 - 1 ----------ACAGAA--AAAACAAAAAAUCACACAGAUCGCAGCCGAGUCGCGUAUCAUUUCUUAAUGCGGAAAUAUUGAAGAAGAAUUUCGGUUG ----------......--.......................(((((((.((...((..((((((......))))))..)).....))...))))))) ( -12.50) >DroYak_CAF1 23626 96 - 1 GACAGCAAAAACAGAAA-AAAACAGAAAAUCACACAGAUCGCAGCCGAGUCUCGUAUCAUUUCUUAAUGCGGAAAUAUUGAAGAAGAAUUUCUGUUG .................-..((((((((.((..((((((((....))).))).))...((((((......)))))).........)).)))))))). ( -15.30) >consensus ____GCAAAAACAGAAA_AAAACAGAAAAUCACACAGAUCGCAACCGAGUCGCGUAUCAUUUCUUAAUGCGGAAAUAUUGAAGAAGAAUUUCUGUUG ....................((((((((.((.....((((((.((...)).))).)))((((((......)))))).........)).)))))))). (-15.44 = -15.80 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:22 2006