| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,532,143 – 17,532,240 |
| Length | 97 |
| Max. P | 0.500000 |
| Location | 17,532,143 – 17,532,240 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 83.07 |
| Mean single sequence MFE | -22.53 |
| Consensus MFE | -14.56 |
| Energy contribution | -15.75 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17532143 97 + 23771897 UUAAAUACACGGCAGCCCGGCCGACUUCGCACACUGGCCGAUAAUGCCUCGUAAAGCGGUGUAAAACUAACCAUUUUCCAUAUAUUUGCAGAUAUAU .....(((((((((...((((((...........))))))....)))).((.....)))))))................(((((((....))))))) ( -23.60) >DroSec_CAF1 18132 96 + 1 UUAAAUACACGGCGGCCCGGCCGACUUCGCACACUGGCCGAUACUGCCU-GUAAGGCGGUGUAAAACUAAACAUUUUCCAUAUAUUUGCAGAUAUAU .....((((.(((((..((((((...........))))))...))))))-))).((.(((((........)))))..))(((((((....))))))) ( -25.40) >DroEre_CAF1 17913 86 + 1 UUAAAUACACGGCGGCCCGGCCGAUAUCGCACACUGGGCAAUAAUGCCU-GUAGAGCGGUGUAAAACUAACCAUUUUCUAUA----------UAAAU .........((((......))))(((((((.(((.(((((....)))))-)).).)))))))....................----------..... ( -21.90) >DroYak_CAF1 19774 96 + 1 UUAAAUACACGGCAGCCCGGCCGAUAUCGCACACUGGGUCACAAUGCCU-GUAAAGCUCUGUAAAACUAAAUGUUUUCCACAUAUUUAAAGAUAUAU .....((((.((((((((((.((....))....)))))).....)))))-)))......((.(((((.....))))).)).(((((....))))).. ( -19.20) >consensus UUAAAUACACGGCAGCCCGGCCGACAUCGCACACUGGCCGAUAAUGCCU_GUAAAGCGGUGUAAAACUAAACAUUUUCCAUAUAUUUGCAGAUAUAU .........((((......))))(((((((..((.(((((....))))).))...)))))))................................... (-14.56 = -15.75 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:21 2006