Locus 6597

Sequence ID 3L_DroMel_CAF1
Location 17,519,541 – 17,519,639
Length 98
Max. P 0.579726
window10741

overview

Window 1

Location 17,519,541 – 17,519,639
Length 98
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 82.52
Mean single sequence MFE -41.12
Consensus MFE -25.98
Energy contribution -26.28
Covariance contribution 0.31
Combinations/Pair 1.18
Mean z-score -1.95
Structure conservation index 0.63
SVM decision value 0.09
SVM RNA-class probability 0.579726
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17519541 98 + 23771897
AGGCAUCUGU------UGCUGCUGAGACUGAGGCACUGGCUGCUGCUGCAUGUGGCCGUAGCUCUGGCUCUGGGAAUAGGGCAAUUGCUGCUCGAAAGGCGGCA
..((.(((((------(.((...(((.((..(((((.(((..(........)..))))).)))..))))).)).))))))))...((((((.(....))))))) ( -39.40)
>DroSec_CAF1 5644 95 + 1
AGGCAUCUGU------UGCUGCUGAGACUGAGGCACUGGCUG---CUGCAUGUGGCCGUAGCUCUGGCUCUGGGAAUAGGCCAAUUGCUGCUCGAAAGGCGGCA
.(((..((((------(.((...(((.((..(((((.(((..---(.....)..))))).)))..))))).)).))))))))...((((((.(....))))))) ( -40.30)
>DroEre_CAF1 5543 95 + 1
AGGCAUCUGU------UGCUGUUGAGCCUGAGGCACUGGCUG---CUGCAUGUGGCCGUAGCUCUGGCUCUGGGAAUAGGGCAUUUGCUGCUCGAAAGGCGGCA
..((.(((((------(.((...(((((.(((..((.(((..---(.....)..)))))..))).))))).)).))))))))...((((((.(....))))))) ( -43.70)
>DroWil_CAF1 6955 98 + 1
GGGCAACUGCGUCGAUAGCUGCUG---CUGCGGCGGCUGUUG---CUGCAGAUGAUUAUAGCCCUGGCUCUGGGAAUAGGGCAGUUGCUGCUCAAACGGCGGCA
((((..(((((.((((((((((((---...))))))))))))---.)))))((....)).))))..((((((....)))))).(((((((......))))))). ( -45.60)
>DroYak_CAF1 5780 95 + 1
AGGCAUCUGU------UGCUGCUGCGGCUGAGGCACUGGCUG---CUGCAUAUGGCCGUAGCUCUGGCUCUGGGAAUAGGGCAUUUGCUGCUCGAAGGGCGGCA
.((((.....------))))((((((((((..((((.....)---.)))...))))))))))....((((((....))))))...(((((((.....))))))) ( -40.50)
>DroAna_CAF1 7287 92 + 1
CGGAAGCUGU------GACUGCUGCGCCUGCUGC---UGCUG---CUGCAUGUGGCCGUAGCUUUGGCUCUGGGAAUAGGGCAUCUGCUGCUCAAAGGGCGGCA
.(((.(((.(------(..(.(.(.(((.(((((---.((..---(.....)..)).)))))...))).).).)..)).))).)))((((((.....)))))). ( -37.20)
>consensus
AGGCAUCUGU______UGCUGCUGAGACUGAGGCACUGGCUG___CUGCAUGUGGCCGUAGCUCUGGCUCUGGGAAUAGGGCAUUUGCUGCUCGAAAGGCGGCA
.................((((((........(((....((.......)).....)))(((((....((((((....))))))....)))))......)))))). (-25.98 = -26.28 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:20 2006