Locus 6595

Sequence ID 3L_DroMel_CAF1
Location 17,510,811 – 17,510,904
Length 93
Max. P 0.715715
window10739

overview

Window 9

Location 17,510,811 – 17,510,904
Length 93
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 78.85
Mean single sequence MFE -30.18
Consensus MFE -18.14
Energy contribution -17.53
Covariance contribution -0.61
Combinations/Pair 1.35
Mean z-score -1.71
Structure conservation index 0.60
SVM decision value 0.39
SVM RNA-class probability 0.715715
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17510811 93 + 23771897
GAAGGACAAACUGAUCAAGGCCAUCGAGGGCAGCCAAGGAUUUGCUGGAGUUGAUUAAUAACACCGGCAACGGGAGUGC------A------AGCGAAUGGCUUU
................((((((((((...(((.((......(((((((.((((.....)))).)))))))..))..)))------.------..)).)))))))) ( -28.90)
>DroPse_CAF1 4118 93 + 1
GAAGGACAAGCUGAUCAAGGCCAUUGAGGGCAGUCAAGGCUUCGCGGGUGUUGAUUAAUAACACCGGAAACGGGGAUGA------U------GGCGAGUGGCUUU
.((((.((.(((((((((.(((..(((((.(......).)))))..))).)))))).......(((....)))......------.------)))...)).)))) ( -30.00)
>DroGri_CAF1 4066 104 + 1
GAAGGAUAAGUUGAUCAAGGCCAUUGAGGGCAGCCAAGGAUUUGCUGGUGUUGAUUAAUAACACUGGCCCUGUGUGCGACGGCGUUGGCAA-UGUGGGUGACAGU
.........((((.((((.(((.(((.(.(((((....)....((..((((((.....))))))..)).)))).).))).))).)))))))-)...(....)... ( -30.60)
>DroSim_CAF1 4660 93 + 1
GAAGGACAAACUAAUCAAGGCCAUCGAGGGCAGCCAAGGAUUCGCUGGAGUUGAUUAAUAACACCGGCAACGGGAGUGC------A------AGCGAAUGGCUUU
................((((((((((...(((.((..(....)(((((.((((.....)))).)))))....))..)))------.------..)).)))))))) ( -26.40)
>DroAna_CAF1 3943 105 + 1
GAAGGACAAGCUCAUCAAGGCCAUUGAGGGCAGCCAAGGGUUCGCUGGUGUUGAUUAAUAACACCGGCACCGGGAGCGACAAUACGGGCGACAAUGAAUGGCUUU
................(((((((((.(..(..(((...(((..((((((((((.....))))))))))))).....((......)))))..)..).))))))))) ( -35.30)
>DroPer_CAF1 4123 93 + 1
AAAGGACAAGCUGAUCAAGGCCAUUGAGGGCAGUCAAGGCUUCGCGGGUGUUGAUUAAUAACACCGGAAACGGGGAUGA------U------GGCGAGUGGCUUU
.((((.((.(((((((((.(((..(((((.(......).)))))..))).)))))).......(((....)))......------.------)))...)).)))) ( -29.90)
>consensus
GAAGGACAAGCUGAUCAAGGCCAUUGAGGGCAGCCAAGGAUUCGCUGGUGUUGAUUAAUAACACCGGCAACGGGAGUGA______U______AGCGAAUGGCUUU
...................(((......))).((((....(((((.(((((((.....)))))))(....)......................)))))))))... (-18.14 = -17.53 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:18 2006