Locus 6594

Sequence ID 3L_DroMel_CAF1
Location 17,503,177 – 17,503,287
Length 110
Max. P 0.769561
window10738

overview

Window 8

Location 17,503,177 – 17,503,287
Length 110
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 95.83
Mean single sequence MFE -27.78
Consensus MFE -26.68
Energy contribution -26.68
Covariance contribution -0.00
Combinations/Pair 1.06
Mean z-score -1.18
Structure conservation index 0.96
SVM decision value 0.53
SVM RNA-class probability 0.769561
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17503177 110 - 23771897
UUUGUGGCGAUAUUAGAGCGGCUUGAGAGCACAGAAUUGGGUUAAUUGGGCGUGAGUUUGAUGUCAGACCUCAA-AACUUAGUGGCUUUUCAUGUCAUAAAUUAAAUUGUA
(((((((((.....(((((.(((.(((..((......))((((.((..(((....)))..))....))))....-..)))))).)))))...))))))))).......... ( -27.80)
>DroSec_CAF1 10499 110 - 1
UUUGUGGCGAUAUUAGAGCGGCUUGAGAGCACAGAAUUGGGUUAAUUGGGCGUGAGUUUGAUGUCAGACCUCAA-AACUUAGUGGCUUUUCAUGUCAUAAAUUAAAUUGUA
(((((((((.....(((((.(((.(((..((......))((((.((..(((....)))..))....))))....-..)))))).)))))...))))))))).......... ( -27.80)
>DroSim_CAF1 10313 111 - 1
UUUGUGGCGAUAUUAGAGCGGCUUGAGAGCACAGAAUUGGGUUAAUUGGGCGUGAGUUUGAUGUCAGACCUCAAAAACUUAGUGGCUUUUCAUGUCAUAAAUUAAAUUGUA
(((((((((.....(((((.(((.(((..((......))((((.((..(((....)))..))....)))).......)))))).)))))...))))))))).......... ( -27.80)
>DroEre_CAF1 15971 110 - 1
UUUGUGGCGAUAUUAGAGCGGCUCGAGAGCACAAAAUUGGGUUAAUUGAGCGAGAGUUUGAUGGCAGACCUCAU-AACUUAGUGGCUUUUCAUGUCAUAAAUUAAAUUGUA
(((((((((.....(((((.((((((.(((.((....)).)))..))))))(((.(((((....))))))))..-.........)))))...))))))))).......... ( -28.80)
>DroYak_CAF1 16168 110 - 1
UUCGUGGCGAUAUUAGAGCGGCUUGAGAGCACAGAAUUGGGUUAAUUGAGCGAGAGUUUGAUGGCAGACCUCAA-AACUUAGGGGCUUUUCAUGCCAUAAAUUAAAUUGUA
...((((((.....(((((.(((....)))......(((((((.((..(((....)))..))....)))).)))-.........)))))...))))))............. ( -26.70)
>consensus
UUUGUGGCGAUAUUAGAGCGGCUUGAGAGCACAGAAUUGGGUUAAUUGGGCGUGAGUUUGAUGUCAGACCUCAA_AACUUAGUGGCUUUUCAUGUCAUAAAUUAAAUUGUA
(((((((((.....(((((.(((.(((..((......))((((.((..(((....)))..))....)))).......)))))).)))))...))))))))).......... (-26.68 = -26.68 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:17 2006