Locus 6592

Sequence ID 3L_DroMel_CAF1
Location 17,495,834 – 17,495,926
Length 92
Max. P 0.513360
window10735

overview

Window 5

Location 17,495,834 – 17,495,926
Length 92
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 84.26
Mean single sequence MFE -35.03
Consensus MFE -20.97
Energy contribution -20.89
Covariance contribution -0.08
Combinations/Pair 1.22
Mean z-score -2.85
Structure conservation index 0.60
SVM decision value -0.04
SVM RNA-class probability 0.513360
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17495834 92 + 23771897
CACGGGGGCAGGGCGGCAGACAGAGAUGGCAUCUAGCACAAGUACCGU--------UGUUCACUUUGUUUG-----CUGUCUUUGUUGUCUGUUCGCUU-------UUCUUU
...((((((.((((((..(((((((((((((...((((.((((.....--------.....))))))))))-----)))))))))))..))))))))))-------)).... ( -29.40)
>DroPse_CAF1 9958 95 + 1
------UGCUGCCGGACAGACAGAGAAGGCAUCUAGCACAAGUACCGUUCCUCCAUUGUGCACUUUGUGUGUGGUGUCGUCUUUGUUGUCUGCUCAG-----------CUUU
------.((((.(((((((.((((((.((((((..((((((((((.((......)).))))...))))))..)))))).)))))))))))))..)))-----------)... ( -37.40)
>DroSec_CAF1 3337 92 + 1
CACGGGGGCAGGGCGGCAGACAGAGAUGGCAUCUAUCACAAGUACCGU--------UGUGCACUUUGUUUG-----CCGUCUUUGUUGUCUGUUCGCUU-------UUCUUU
...((((((.((((((..(((((((((((((..((.(((((......)--------)))).....))..))-----)))))))))))..))))))))))-------)).... ( -32.90)
>DroSim_CAF1 3024 92 + 1
CACGGGGGCAGGGCGGCAGACAGAGAUGGCAUCUAGCACAAGUACCGU--------UGUGCACUUUGUUUG-----CCGUCUUUGUUGUCUGUUCGCUU-------UUCUUU
...((((((.((((((..(((((((((((((..((((((((......)--------)))))....))..))-----)))))))))))..))))))))))-------)).... ( -36.20)
>DroEre_CAF1 8986 99 + 1
CACGGGGGCAGGGCGGCAGACAGAGAUGGCAUCUAGCACAAGUACCGU--------UGUACACUUUGUUUG-----CCGUCUUUGUUGUCUGUUCGUUUUGUCUGUUUCUUU
.....((((((((((((((((((((((((((...((((...((((...--------.))))....))))))-----)))))))...)))))).)))))))))))........ ( -38.10)
>DroYak_CAF1 8625 92 + 1
CACGGGGGCAGGGCGGCAGACAGAGAUGGCAUCUAGCACAAGUACCGU--------UGUGCACUUUGUUUG-----CCGUCUUUGUUGUCUGUUCGCUU-------UUCUUU
...((((((.((((((..(((((((((((((..((((((((......)--------)))))....))..))-----)))))))))))..))))))))))-------)).... ( -36.20)
>consensus
CACGGGGGCAGGGCGGCAGACAGAGAUGGCAUCUAGCACAAGUACCGU________UGUGCACUUUGUUUG_____CCGUCUUUGUUGUCUGUUCGCUU_______UUCUUU
..........(((((((((((((((((((........((((((((............))))...))))........)))))))...)))))).))))))............. (-20.97 = -20.89 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:14 2006