Locus 6591

Sequence ID 3L_DroMel_CAF1
Location 17,494,694 – 17,494,784
Length 90
Max. P 0.806514
window10734

overview

Window 4

Location 17,494,694 – 17,494,784
Length 90
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 81.07
Mean single sequence MFE -29.93
Consensus MFE -20.74
Energy contribution -21.18
Covariance contribution 0.45
Combinations/Pair 1.22
Mean z-score -1.91
Structure conservation index 0.69
SVM decision value 0.63
SVM RNA-class probability 0.806514
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17494694 90 - 23771897
AACAAGCCGAUCCAACGUGUUGUCGCAUUCG-----CAAAGGGA-GU--AUCGAAAA---CUGAUUACAUGGGUCCGACGGAUCAAGACUGGAUCGGCUGU
....((((((((((.(((((.(((((....)-----)......(-((--.......)---))))).)))))(((((...))))).....)))))))))).. ( -32.30)
>DroPse_CAF1 8554 91 - 1
----------UUUACCGAGUGGUCGCGAUUGCUUUACAACAGGAACUACAACAAAAACAGCUAAUUUCAUGGGUCUGACAGAUCAAGAUUGGAUCGGCUGU
----------........(((((..(..(((.....)))..)..))))).......((((((...((((..((((.....)))).....))))..)))))) ( -18.20)
>DroSec_CAF1 2207 87 - 1
AACAAGCCGAUCCAACGUG---UCGCAUUUG-----CAGCGGGA-GU--AUCGAAAA---CUGGUUACAUGGGUCCGACGGAUCAAGACUGGAUCGGCUGU
....((((((((((.((((---(.((.((((-----..((....-))--..))))..---...)).)))))(((((...))))).....)))))))))).. ( -31.20)
>DroSim_CAF1 1893 90 - 1
AACAAGCCGAUCCAACGUGUUGUCGCAUUCG-----CAGCGGGA-GU--AUCGAAAA---CUGGUUACAUGGGUCCGACGGAUCAAGACUGGAUCGGCUGU
....((((((((((.(((((..(((..((((-----..((....-))--..))))..---.)))..)))))(((((...))))).....)))))))))).. ( -34.00)
>DroEre_CAF1 7853 90 - 1
AACAAGCCGAUCCAACGCGUUGUCGCAUUCG-----CAGCGGAA-GU--ACAGAAAA---CUGGUUACAUGGGUCCGACGGAUCAAGACUGGAUCGGCUGU
....((((((((((..(((....)))(((((-----...((((.-((--((((....---)))..))).....)))).)))))......)))))))))).. ( -31.50)
>DroYak_CAF1 7488 89 - 1
AAGGAGCCGAUCCAACGCGUUGUCGCAUUCG-----CAGCGGUA-GU--AC-GAAAA---CUGGUUACAUGGGUCCGACGGAUCAAGACUGGAUCGGCUGU
....(((((((((..((..((..(((.....-----..)))..)-).--.)-)....---..((((.....(((((...)))))..))))))))))))).. ( -32.40)
>consensus
AACAAGCCGAUCCAACGUGUUGUCGCAUUCG_____CAGCGGGA_GU__AUCGAAAA___CUGGUUACAUGGGUCCGACGGAUCAAGACUGGAUCGGCUGU
....((((((((((..(((....))).............................................(((((...))))).....)))))))))).. (-20.74 = -21.18 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:13 2006