Locus 6589

Sequence ID 3L_DroMel_CAF1
Location 17,481,926 – 17,482,021
Length 95
Max. P 0.799411
window10731

overview

Window 1

Location 17,481,926 – 17,482,021
Length 95
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 64.25
Mean single sequence MFE -26.40
Consensus MFE -11.98
Energy contribution -11.95
Covariance contribution -0.03
Combinations/Pair 1.20
Mean z-score -1.63
Structure conservation index 0.45
SVM decision value 0.61
SVM RNA-class probability 0.799411
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17481926 95 + 23771897
-----UAUAGCU-UGGGUACGUAUCCA--UACCGGCCGACGACGUUUCCUUUUGAAUCG----UCGAAUGAGAGUGUCGUUUA-UUUA------UUCGGUUCUGGGUACGUAU------U
-----.......-..((((((((((((--.(((((..(((((((((((..(((((....----))))).)))).)))))))..-....------.)))))..)))))))))))------) ( -31.80)
>DroPse_CAF1 2436 98 + 1
UACACGAUAGCUUUGGGUACGUAUCUA--CUCCGGCCG-----------UUAAGAGAGAGA--GAAAAAGAGAGAGUUCUGUA-UUUCGUUUCGUUUUGUGUUGGGUACGUAU------U
...............(((((((((...--..(((((((-----------....((((..((--((...((((....))))...-)))).))))....)).)))))))))))))------) ( -20.00)
>DroEre_CAF1 2512 92 + 1
-----UAUAGCU-UGGGUACGUAUCCA--UACCGGCCG---ACGUUUCCUUUCGAAUCG----UCGAAUGAGAGUGUCGUUUA-UAUA------UUCGGUUCUGGGUACGUAU------U
-----.......-..((((((((((((--.(((((.((---(((((((..(((((....----))))).)))).)))))....-....------.)))))..)))))))))))------) ( -30.50)
>DroYak_CAF1 2184 91 + 1
-----UAUAGCU-UGGGUACGUAUCCA--UUCCGGCCG---ACGUUUCCUUUCGAAUCG----UCGAAUGAGUGUGUCCUUUA-UUUA------UUCGGUUCUGGGUACGUAU-------
-----.......-...(((((((((((--....(((((---(((.(((.....))).))----))(((((((((.......))-))))------))))))).)))))))))))------- ( -31.50)
>DroAna_CAF1 2104 103 + 1
UGCACUAUAGCU-UGGGUACGUAUCCACUUUCUGGUUG---AAGUUUACCAUU---UUU----UGGAAUUUGUUUGGUUUUGAAAUAA------AUCGUAUCUGGGUACGUAUGUAUAAU
.((......)).-((.(((((((((((.....((((..---......))))..---(((----..(((((.....)))))..)))...------........))))))))))).)).... ( -24.30)
>DroPer_CAF1 27713 100 + 1
UACACGAUAGCUUUGGGUACGUAUCUA--CUCCGGCCG-----------UUAAGAGAGAGAGUGAAAAAGAGAGAGUUCUGUA-UUUCGUUUCGUUUUGUGUUGGGUACGUAU------U
...............((((((((((((--(((......-----------....))).((((.(((((.(.((......)).).-))))))))).........)))))))))))------) ( -20.30)
>consensus
_____UAUAGCU_UGGGUACGUAUCCA__UUCCGGCCG___ACGUUUCCUUUAGAAUCG____UCGAAUGAGAGUGUCCUUUA_UUUA______UUCGGUUCUGGGUACGUAU______U
................(((((((((((....((((............................................................))))...)))))))))))....... (-11.98 = -11.95 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:10 2006