Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,480,137 – 17,480,256 |
Length | 119 |
Max. P | 0.916852 |
Location | 17,480,137 – 17,480,256 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 91.74 |
Mean single sequence MFE | -40.15 |
Consensus MFE | -34.72 |
Energy contribution | -35.23 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.16 |
Mean z-score | -2.00 |
Structure conservation index | 0.86 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17480137 119 + 23771897 AUUGGCAAGAAGUUGGCCAAGGCCGAGGCCCUGGGCGAGGCCGGCGAAGUGGAGGACAGCAUGGAGCUGAUGAAGGAGAUCGAGGAGCUGCGUGCUAAGAAGAUCAAGGCCGAGCACGA .(((((..((.(((((((...(((.((...)).)))..)))))))............((((((.((((..(((......)))...)))).)))))).......))...)))))...... ( -39.80) >DroEre_CAF1 729 119 + 1 AUUGGCAAGAAGUUGGCCAAGGCCGAGGCACUCGGCGAGGCCGGCGAAGUGGAGGACAGCAUGGAGCUAAUGAAGGAGAUUGAGGAGCUGCGUGCUAAGAAAAUCAAAGCCGAGCACGA .(((((.....(((((((...((((((...))))))..)))))))............((((((.((((..(.((.....)).)..)))).))))))............)))))...... ( -45.00) >DroWil_CAF1 392 119 + 1 AUUGGCAAGAAACUGGCUAAAGCCGAGGCCCUGGGCGAGGCUGGCGAAGUGGAGGACAGCAUGGAGCUGAUGAAGGAGAUUGACGAGUUGCGGGGCAAGAAGACCAAAGCCGAGCAUGA .(((((......(((((....))).))(((((((((..((((.....)))......((((.....))))..............)..))).))))))............)))))...... ( -32.20) >DroYak_CAF1 391 119 + 1 AUUGGCAAGAAGUUGGCCAAGGCCGAGGCGCUCGGCGAGGCCGGCGAAGUGGAGGACAGCAUGGAGCUGAUGAAGGAGAUCGAGGAGCUGCGUGCUAAGAAGAUCAAGGCCGAGCACGA .(((((..((.(((((((...((((((...))))))..)))))))............((((((.((((..(((......)))...)))).)))))).......))...)))))...... ( -43.60) >consensus AUUGGCAAGAAGUUGGCCAAGGCCGAGGCCCUCGGCGAGGCCGGCGAAGUGGAGGACAGCAUGGAGCUGAUGAAGGAGAUCGAGGAGCUGCGUGCUAAGAAGAUCAAAGCCGAGCACGA .(((((.....(((((((...((((((...))))))..)))))))............((((((.((((..(((......)))...)))).))))))............)))))...... (-34.72 = -35.23 + 0.50)
Location | 17,480,137 – 17,480,256 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.74 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -24.61 |
Energy contribution | -25.55 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.15 |
Mean z-score | -1.85 |
Structure conservation index | 0.79 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.731238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17480137 119 - 23771897 UCGUGCUCGGCCUUGAUCUUCUUAGCACGCAGCUCCUCGAUCUCCUUCAUCAGCUCCAUGCUGUCCUCCACUUCGCCGGCCUCGCCCAGGGCCUCGGCCUUGGCCAACUUCUUGCCAAU ..(.((..((((..((((.....(((.....)))....))))........((((.....))))..............))))..(.(((((((....))))))).)........)))... ( -33.20) >DroEre_CAF1 729 119 - 1 UCGUGCUCGGCUUUGAUUUUCUUAGCACGCAGCUCCUCAAUCUCCUUCAUUAGCUCCAUGCUGUCCUCCACUUCGCCGGCCUCGCCGAGUGCCUCGGCCUUGGCCAACUUCUUGCCAAU ..(.((..(((...........(((((.(.((((.................)))).).)))))...........)))((((..((((((...))))))...))))........)))... ( -32.08) >DroWil_CAF1 392 119 - 1 UCAUGCUCGGCUUUGGUCUUCUUGCCCCGCAACUCGUCAAUCUCCUUCAUCAGCUCCAUGCUGUCCUCCACUUCGCCAGCCUCGCCCAGGGCCUCGGCUUUAGCCAGUUUCUUGCCAAU ....((..((((((((.(...((((...))))..................((((.....))))....................).))))))))..(((....)))........)).... ( -24.40) >DroYak_CAF1 391 119 - 1 UCGUGCUCGGCCUUGAUCUUCUUAGCACGCAGCUCCUCGAUCUCCUUCAUCAGCUCCAUGCUGUCCUCCACUUCGCCGGCCUCGCCGAGCGCCUCGGCCUUGGCCAACUUCUUGCCAAU ..(.((..(((...((((.....(((.....)))....))))........((((.....))))...........)))((((..((((((...))))))...))))........)))... ( -34.60) >consensus UCGUGCUCGGCCUUGAUCUUCUUAGCACGCAGCUCCUCAAUCUCCUUCAUCAGCUCCAUGCUGUCCUCCACUUCGCCGGCCUCGCCCAGGGCCUCGGCCUUGGCCAACUUCUUGCCAAU ....((..(((...((((.....(((.....)))....))))........((((.....))))...........)))((((..((((((...))))))...))))........)).... (-24.61 = -25.55 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:09 2006