| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,475,832 – 17,475,925 |
| Length | 93 |
| Max. P | 0.918655 |
| Location | 17,475,832 – 17,475,925 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 74.20 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -17.58 |
| Energy contribution | -17.70 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918655 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17475832 93 + 23771897 UAAC---------AAAAC---CCUUAAUUCCCCGCAGAUAAGGCCAUGGCCAUGGGUGUGAUACAGUCGGCCAUCGGCCUGUUCGGCAACGUUCCCUGUCCCAUC ....---------.....---............((((...(((((((((((..((.((.....)).)))))))).)))))(..((....))..).))))...... ( -28.00) >DroVir_CAF1 40467 97 + 1 UUACCAACUGAUAUACAC---UUU-----CAUACCAGAUAAAGCUAUGGCUAUGGGCGUCAUUCAGUCGGCCAUCGGCCUGUUUGGUAAUGUUCCUUGUCCAAUC (((((..(((.(((....---...-----.))).)))...((((...((((((((.((.(.....).)).)))).)))).)))))))))................ ( -23.50) >DroGri_CAF1 39855 94 + 1 ---CUAAUUAAAAUGCAC---UCU-----UCAAAUAGAUAAGGCCAUGGCAAUGGGUGUUAUACAGUCGGCCAUUGGUCUAUUUGGUAAUGUUCCUUGUCCGAUC ---...........(((.---...-----((((((((((..((((((((((.....))))))......))))....))))))))))...)))............. ( -19.10) >DroSim_CAF1 34896 92 + 1 UAAC---------AAAAC---CCUAA-AUCCCCGCAGAUAAGGCCAUGGCCAUGGGUGUGAUACAGUCGGCCAUCGGCCUGUUCGGCAACGUUCCCUGUCCCAUC ....---------.....---.....-......((((...(((((((((((..((.((.....)).)))))))).)))))(..((....))..).))))...... ( -28.00) >DroWil_CAF1 44099 94 + 1 UAUC---------ACAACAAUUCUCA-UUA-AAACAGAUAAAGCCAUGGCCAUGGGUGUCAUACAGUCGGCCAUUGGCCUAUUUGGAAAUGUUCCUUGCCCCAUU ....---------....(((....((-((.-...((((((..(((((((((..((.((.....)).))))))).)))).))))))..))))....)))....... ( -22.10) >DroYak_CAF1 34942 91 + 1 UAAC---------CAAAC---C-UAA-AUCCCCACAGAUAAGGCCAUGGCCAUGGGUGUGAUACAGUCGGCCAUCGGCCUGUUCGGCAACGUUCCCUGUCCCAUC ....---------.....---.-...-......((((...(((((((((((..((.((.....)).)))))))).)))))(..((....))..).))))...... ( -27.70) >consensus UAAC_________AAAAC___CCU_A__UCCCAACAGAUAAGGCCAUGGCCAUGGGUGUGAUACAGUCGGCCAUCGGCCUGUUCGGCAACGUUCCCUGUCCCAUC .................................((((...(((((((((((..((.((.....)).)))))))).)))))....((.......))))))...... (-17.58 = -17.70 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:07 2006