Locus 6585

Sequence ID 3L_DroMel_CAF1
Location 17,475,486 – 17,475,596
Length 110
Max. P 0.591765
window10724

overview

Window 4

Location 17,475,486 – 17,475,596
Length 110
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 84.81
Mean single sequence MFE -41.13
Consensus MFE -34.08
Energy contribution -34.75
Covariance contribution 0.67
Combinations/Pair 1.14
Mean z-score -1.61
Structure conservation index 0.83
SVM decision value 0.12
SVM RNA-class probability 0.591765
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17475486 110 - 23771897
-------GCAUCUCACCAUCUGGAAUGCAAGCACAAUCGGAGUAGAGUGUGCGAUUGUCGCUGGGCCGCAGUGAGGAGCUGCUGCAUCCGGCGUGGCAGGCCGAGAUGUACAUUUUG
-------(((((((.......((..(((..(((((.((......)).)))))......((((((((.(((((.....))))).))..))))))..)))..)))))))))........ ( -42.61)
>DroVir_CAF1 40136 110 - 1
-------AAGAUUUACCAUGUGGAAUGCAGGCACAGUCGGAGUAGAGUGUGCGAUUGUCGCUGGCGCGCAGCGUGGAGCUGCUGCAGCCGGCAUGGCAGGCCGAGAUGUACAUUUUG
-------(((((.(((....(((..(((..(((((.((......)).))))).......(((((((((((((.....))))).)).))))))...)))..)))....))).))))). ( -46.70)
>DroGri_CAF1 39307 110 - 1
-------AUGACAUACCAUUUGGAAUGCAAGCACAGUCGGAGUAGAGUGUGCGAUUGUCGCUGGGACGCAGCAUGGAGCUGCUGCAGCCGGCAUGGCAGGCCGAGAUGUACAUUUUG
-------(((((((....(((((..(((..(((((.((......)).))))).......(((((...((((((......))))))..)))))...)))..))))))))).))).... ( -41.10)
>DroWil_CAF1 43722 117 - 1
GCUUUCUUCUGCUUACCAUCUGGAAUGCAAGCACAAUCCGAAUAGAGUGUGCGAUUAUCGCUGGCCCUCAGCGAGGAGCUGCUACAGCCGGCAUGGCAGGCCGAGAUGUACAUCUUG
((........))....(((((((..(((..(((((.((......)).))))).......((((((...((((.....)))).....))))))...)))..)).)))))......... ( -38.80)
>DroMoj_CAF1 38833 110 - 1
-------AAAGUUUACCAUUUGGAAUGCAAGCACAAUCGGUGUAGAGUGUGCGAUUGUCGCUGAAACGCAGCUGGGAGCUGCUGCAGCCGGCAUGGCAGGCCGAGAUGUACAUUUUG
-------(((((.(((..(((((..(((..(((((.((......)).)))))...((((((((....(((((.....)))))..))).)))))..)))..)))))..))).))))). ( -39.80)
>DroPer_CAF1 36603 110 - 1
-------AAGACUCACCAUCUGGAAUGCAAGCACAGUUCGAGUAGAGUGUGCGAUUGUCGCUGGGCCGCAGCGAGGAGGUGCUGCAGCCGGCAUGGCAGGCCGAUAUAUACAUCGUC
-------..(((.........((..(((..(((((.(((.....)))))))).......(((((.(.((((((......)))))).))))))...)))..))(((......)))))) ( -37.80)
>consensus
_______AAGACUUACCAUCUGGAAUGCAAGCACAAUCGGAGUAGAGUGUGCGAUUGUCGCUGGGCCGCAGCGAGGAGCUGCUGCAGCCGGCAUGGCAGGCCGAGAUGUACAUUUUG
................(((((((..(((..(((((.((......)).))))).......(((((...((((((......))))))..)))))...)))..)).)))))......... (-34.08 = -34.75 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:03 2006