| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,450,680 – 17,450,782 |
| Length | 102 |
| Max. P | 0.927876 |
| Location | 17,450,680 – 17,450,782 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.44 |
| Mean single sequence MFE | -19.64 |
| Consensus MFE | -11.27 |
| Energy contribution | -12.95 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.927876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17450680 102 + 23771897 AUGUAAUAUACAAGUUCGUCAUAAGGAAGCCCCACUGCACAUA--CAUACCACACCACAUUGUGUGCAACACAU----AUAAAUGUGAAUGUUUAUUCCAUCUGACAA .................((((...((((.......((((((((--...............)))))))).(((((----....)))))........))))...)))).. ( -20.56) >DroSec_CAF1 9740 104 + 1 AUUAAAUAUACAAGUUCGUCAUAAGGAAGCCCCACUGCACAUACACAUACCACACCACAUUGUGUGCAACACAU----AUAAAUGUGCAUGUUUAUUCCAUCUGACAA .................((((...((((....((.(((((((........(((((......)))))........----....)))))))))....))))...)))).. ( -21.15) >DroSim_CAF1 10560 104 + 1 AUUAAAUAUACAAGUUCGUCAUAAGGAAGCCCCACUGCACAUACACAUACCACACCACAUUGUGUGCAACACAU----AUAAAUGUGCAUGUUUAUUCCAUCUGACAA .................((((...((((....((.(((((((........(((((......)))))........----....)))))))))....))))...)))).. ( -21.15) >DroEre_CAF1 8743 90 + 1 AACAAA-----GAGUUCGUCAUAGGGAGGCCCCACUGCAGAUAC--------CACCACACU-----CACCCCAUGUAUGUACAUGUGAAUGUUUAUUCGAUCUGACAA ......-----......(((...(((....))).....((((..--------....(((.(-----(((...((((....)))))))).))).......))))))).. ( -16.52) >DroYak_CAF1 9254 93 + 1 AACAAA-----AAGUUCAUCAUAAGCAAGCCCCACUGCACAUGC------UUCAGCACAUUGUGUGCACCACAU----AUAAAUGUGAAUGUUUAUUCGAUCUGACAA ......-----..(((.((((((((((........(((((((((------....))).....)))))).(((((----....)))))..)))))))..)))..))).. ( -18.80) >consensus AUCAAAUAUACAAGUUCGUCAUAAGGAAGCCCCACUGCACAUAC_CAUACCACACCACAUUGUGUGCAACACAU____AUAAAUGUGAAUGUUUAUUCCAUCUGACAA .................((((.(.((((.......((((((((.................)))))))).(((((........)))))........)))).).)))).. (-11.27 = -12.95 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:02 2006