Locus 6582

Sequence ID 3L_DroMel_CAF1
Location 17,445,141 – 17,445,261
Length 120
Max. P 0.712652
window10719

overview

Window 9

Location 17,445,141 – 17,445,261
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -43.67
Consensus MFE -36.64
Energy contribution -37.64
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.84
SVM decision value 0.38
SVM RNA-class probability 0.712652
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17445141 120 + 23771897
CUCGGUGAUGCCGAUCAUAAUGGACCGCAUUGGCAUCCGAUGCCCGGUGCUCGGCUGCGCCAACUUGUGCUACAUCCAGCCAGAUCACCUGGUCCAGGACGCCAAUGUCCAGCAAAAGAU
.((((.....))))((....(((((((((((((...)))))))..((((.((((((((((......)))).......)))).)).)))).))))))(((((....))))).......)). ( -45.11)
>DroSec_CAF1 4394 120 + 1
CUCGGUGAUGCCAAUCAUCAUGGACAACUUUGGCAUCCGAUGCCCGGUGCUCGGCUGUGCCAACAGGUCCUACAUCCAGCCAGAUCACCUGGUCGAGGACUCCAAUGUCCAACAGAAGAU
.((((((((....)))))).((((((...((((..(((...(((.((((.(((((((.(((....)))........))))).)).)))).)))...)))..))))))))))...)).... ( -43.00)
>DroSim_CAF1 4841 120 + 1
CUCGGUGAUGCCAAUCAUCAUGGACAACUUGGGCAUCCGAUGCCCGGUGCUCGGCUGUGCCAACAGGUCCUAUAUCCAGCCAGAUCACCUGGUCGAGGACUCCAAUGUCCAGCAGAAGAU
.((((((((....)))))).((((((..(((((..(((...(((.((((.(((((((.(((....)))........))))).)).)))).)))...))).)))))))))))...)).... ( -42.90)
>consensus
CUCGGUGAUGCCAAUCAUCAUGGACAACUUUGGCAUCCGAUGCCCGGUGCUCGGCUGUGCCAACAGGUCCUACAUCCAGCCAGAUCACCUGGUCGAGGACUCCAAUGUCCAGCAGAAGAU
...((((((....)))))).((((((...((((..(((...(((.((((.(((((((...................))))).)).)))).)))...)))..))))))))))......... (-36.64 = -37.64 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:59 2006