Locus 6581

Sequence ID 3L_DroMel_CAF1
Location 17,444,587 – 17,444,699
Length 112
Max. P 0.541320
window10718

overview

Window 8

Location 17,444,587 – 17,444,699
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 95.24
Mean single sequence MFE -24.67
Consensus MFE -22.00
Energy contribution -22.67
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.89
SVM decision value 0.02
SVM RNA-class probability 0.541320
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17444587 112 - 23771897
AAUCUGACAUUUCCUUGAAGAACUUUUUGUUUUCCACUAAAGUGGAAAGUGCGGAAUCAGCAAGGUAAUUGAAUUCCAUUUUAUCCAGAAUAUUUAAGCCAAAUGUUCAAGA
..((((((((((.((((((.....(((((((((((((....))))))))...(((((...(((.....))).)))))........)))))..))))))..)))))))..))) ( -24.50)
>DroSec_CAF1 3840 112 - 1
AAUCUGACAUUUCCUUGAAGAACUUUUGGUUUUCCACCAAAGUGGAAAGUGCGGAAUCAGCAAGGUUAUUGAAUUCCAUUUUAUAUAGAAUAUUUAAGCCAAAUGUUCAACA
...................((((.(((((((((((((....)))))))....(((((...(((.....))).)))))....................)))))).)))).... ( -24.90)
>DroSim_CAF1 4287 112 - 1
AAUCUGACAUUUCCUUGAAGAACUUUUGGUUUUCCACCAAAGUGGAAAGUGCGGAAUCAGCAAGGUUAUUGAACUCCAUUUUAUCUUGAAUAUUUAAGCCAAAUGUUCAACA
...................((((.(((((((((((((....))))))).....((((...((((((...((.....))....))))))...))))..)))))).)))).... ( -24.60)
>consensus
AAUCUGACAUUUCCUUGAAGAACUUUUGGUUUUCCACCAAAGUGGAAAGUGCGGAAUCAGCAAGGUUAUUGAAUUCCAUUUUAUCUAGAAUAUUUAAGCCAAAUGUUCAACA
...................((((.(((((((((((((....)))))))....(((((...(((.....))).)))))....................)))))).)))).... (-22.00 = -22.67 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:58 2006