| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,438,297 – 17,438,404 |
| Length | 107 |
| Max. P | 0.603866 |
| Location | 17,438,297 – 17,438,404 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 82.86 |
| Mean single sequence MFE | -24.99 |
| Consensus MFE | -17.80 |
| Energy contribution | -18.19 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17438297 107 + 23771897 GCAUAUAUAUUAACUUCCAUUACUUAUAUGUAUACUAGGGAUGUACAACACUUCCGAUUUGAUUCUGGAGUGGGAGCCGCACACGCCCAUCUCCUUUGACCCGGAAA ..............((((..(((......))).....(((........((((((.((......)).))))))((((..((....))....)))).....))))))). ( -24.30) >DroSec_CAF1 7191 107 + 1 GCAUAUAUAUUAACUUUUCUUACUCAUAUUUAUAAUAGGGAUGUACAACACUUCCGAUUUAAUUCUGGAGUGGGAGCCGCAUACGCCCAUCUCCUUUGACCCGGAAA ((((...(((((....................)))))...)))).......(((((..((((....((((((((.(.......).)))).)))).))))..))))). ( -21.05) >DroSim_CAF1 6920 107 + 1 GCAUUUAUAUUUACUUCCCUUACUUUUAUUUAUAAUAGGGAUGUACAACACUUCCGAUUUGAUUCUGGAGUGGGAGCCGCACACACCCAUCUCCUUUGAUCCGGAAA ...........(((.(((((................))))).)))......(((((..(..(....((((((((.(.......).)))).)))).)..)..))))). ( -26.19) >DroEre_CAF1 7002 101 + 1 GGAUAUAUAUUUACUUACCUUACCCAUAU------CAGGGAUGUACAACACUUCCGAUUUGAUUCUGGAGUGGGAGCCCCACACGCCCAUCUCCUUCGAUCCGGAAA ......................(((....------..)))...........(((((..((((....((((((((.(.......).)))).)))).))))..))))). ( -25.70) >DroYak_CAF1 7154 101 + 1 GGAUAUAUAUUUACUUCCCUUACUUAUAU------CAGGGAUGUACAACACUUCCGAUUUGAUUCUGGAGUGGGAGCCACACACGCCCAUCUCCUUCGAUCCGGAAA ...........(((.(((((.........------.))))).)))......(((((..((((....((((((((.(.......).)))).)))).))))..))))). ( -28.70) >DroMoj_CAF1 9661 101 + 1 GGAUAAAUAUUAAAUAUUCUUAUUUA------UGCUAGGGAUGUACAACACUUCUGACUUAAUUCUGGAGUGGGAGGAUCGUGCGCCUAUAUCUUUCGAUCCCGAUA (.(((((((...........))))))------).)..(((((......((((((.((......)).))))))(((((((.(((....)))))))))).))))).... ( -24.00) >consensus GCAUAUAUAUUAACUUCCCUUACUUAUAU___UA_UAGGGAUGUACAACACUUCCGAUUUGAUUCUGGAGUGGGAGCCGCACACGCCCAUCUCCUUCGAUCCGGAAA ............((.(((((................))))).)).......(((((..((((....((((((((.(.......).)))).)))).))))..))))). (-17.80 = -18.19 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:50 2006