Locus 6577

Sequence ID 3L_DroMel_CAF1
Location 17,432,434 – 17,432,524
Length 90
Max. P 0.570890
window10709

overview

Window 9

Location 17,432,434 – 17,432,524
Length 90
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 88.81
Mean single sequence MFE -29.48
Consensus MFE -17.73
Energy contribution -17.57
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -3.39
Structure conservation index 0.60
SVM decision value 0.07
SVM RNA-class probability 0.570890
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17432434 90 + 23771897
ACCGCUCCGGUUUUUGCGCCAGCUCAGACUAU------UAGAUCUUGUAUUUGGAUCUAAUAU------UUUGUCAGCUAUAAAACUGAGGAAACCUGUCAC
...(((..(((......))))))...((((((------(((((((.......))))))))))(------(((.((((........)))).))))...))).. ( -23.00)
>DroSec_CAF1 981 90 + 1
AACGCUCCGGUUUUUGCGCCAGCUCAGACUAU------UAGAUCUUGUAUUUGGAUCUAAUAU------UUGGUCAGCUAUAAAACCGGGGAAACCUGUCAC
....((((((((((...((..((.((((.(((------(((((((.......)))))))))))------)))))..))...))))))))))........... ( -31.60)
>DroSim_CAF1 992 90 + 1
ACCGCUCCGGUUUUUGCGGCAGCUCAGACUAU------UAGAUCUUGUAUUUGGAUCUAAUAU------UUGGUCAGCUAUAAAACCGGGGAAACCUGUCAC
....((((((((((...(((.(..((((.(((------(((((((.......)))))))))))------)))..).)))..))))))))))........... ( -31.60)
>DroEre_CAF1 1061 95 + 1
ACCGGUCCGGUUUUUGCGCCAGCUCAGAUUAU------UAGAUCUUGUAUUUAGAUCUAAUAUUUGCAUUUGGUCAGCUAAAAAACCG-GGAAACCUGUCAC
...(((((((((((((((((((..(((((.((------(((((((.......))))))))))))))...)))))..))..))))))))-)...)))...... ( -31.30)
>DroYak_CAF1 1145 94 + 1
ACCGGUCCGGUUUUUGCGCCAGCUCAGCUUACUACGAGUAGAUCUUGUAUUUGGAUCUAAUAU------UUGGUCAGCUAAA-AACCG-GGAAACCUGUCAC
...((((((((((((((....))..((((.((((....(((((((.......)))))))....------.)))).)))))))-)))))-)...)))...... ( -29.90)
>consensus
ACCGCUCCGGUUUUUGCGCCAGCUCAGACUAU______UAGAUCUUGUAUUUGGAUCUAAUAU______UUGGUCAGCUAUAAAACCG_GGAAACCUGUCAC
........(((((((.((..((((..(((((.......(((((((.......)))))))...........))))))))).......)).)))))))...... (-17.73 = -17.57 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:49 2006