Locus 6575

Sequence ID 3L_DroMel_CAF1
Location 17,418,348 – 17,418,467
Length 119
Max. P 0.511277
window10702

overview

Window 2

Location 17,418,348 – 17,418,467
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.85
Mean single sequence MFE -48.83
Consensus MFE -21.75
Energy contribution -21.83
Covariance contribution 0.09
Combinations/Pair 1.32
Mean z-score -1.72
Structure conservation index 0.45
SVM decision value -0.04
SVM RNA-class probability 0.511277
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17418348 119 + 23771897
AAAGCCCCCAACGACGCCAAA-UGGAUUGGGCAGUGCAACUGGUGGCCACCGAUCCGCGGCCACCUCGCCCUUCGAGGGCUGCGGGGAAUUGGCCAACGGCAUUGGCAAGCCGGCCAGCU
...(((((((...........-)))...)))).......((((((((((....(((((((((..((((.....)))))))))))))....)))))..((((........))))))))).. ( -52.50)
>DroPse_CAF1 26122 107 + 1
CAAGUCC---AUCACACCCAACGGGAUCGG----------AGGCGGCCAUCGGUCGGCCGCCACCUCGCCCUUUGAGGUGUGCAGCGAUCUGGCCAACGGCACCGGAAAGCCGGCAAGCU
.......---..(((((((((.(((...((----------.(((((((.......))))))).))...))).))).)))))).(((...(((((...((....))....)))))...))) ( -49.80)
>DroYak_CAF1 25551 119 + 1
CAAGCCACCAACGACGCCAAA-UGCACUGGGCAGCACAACUGGCGGCCAUCGGUCGGCGGCCACCUCGCCCUUUGAGGGCUGCGGGGAUUUGGCCAACGGCACUGGCAAGCCGGCCAGCU
...(((.(....)..((((((-(.(.((..(((((.....((((.(((.......))).))))(((((.....))))))))))))).)))))))....))).(((((......))))).. ( -49.10)
>DroMoj_CAF1 26947 104 + 1
CAAGCCG---GGCACACCCAA-CGGUCUG------------CAGGCUCAGCGUUCGGCCGCCACCUCGCCGUUCGAGUUGUGCGCGGAUCUGGCCAACGGCAGCGGCAAGCCGGCCAGCU
...((((---.(((.(((...-.))).))------------).(((.(((.(((((..(((((.((((.....)))).)).))))))))))))))..))))((((((......))).))) ( -43.00)
>DroAna_CAF1 26190 104 + 1
CAAGCCUCCAACCACUCCGAA-UGGAGUGG---------------GCCAUCGUUCCGCUGCCACCUCGCCUUUCGAGGGCUGCGGAGAGUUGGCCAAUGGUAGUGGCAAGCCUGCCAGUU
...((..(((..((((((...-.))))))(---------------((((...((((((.(((..((((.....))))))).))))))...)))))..)))..))((((....)))).... ( -48.80)
>DroPer_CAF1 26110 107 + 1
CAAGUCC---AUCACACCCAACGGGAUCGG----------AGGCGGCCAUCGGUCGGCCGCCACCUCGCCCUUUGAGGUGUGCAGCGAUCUGGCCAACGGCACCGGAAAGCCGGCAAGCU
.......---..(((((((((.(((...((----------.(((((((.......))))))).))...))).))).)))))).(((...(((((...((....))....)))))...))) ( -49.80)
>consensus
CAAGCCC___ACCACACCCAA_UGGAUUGG___________GGCGGCCAUCGGUCGGCCGCCACCUCGCCCUUCGAGGGCUGCGGGGAUCUGGCCAACGGCACCGGCAAGCCGGCCAGCU
...(((..........((.....))...................(((((..((((....((..(((((.....)))))...))...)))))))))...))).((((....))))...... (-21.75 = -21.83 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:43 2006