Locus 6572

Sequence ID 3L_DroMel_CAF1
Location 17,402,415 – 17,402,514
Length 99
Max. P 0.740747
window10698

overview

Window 8

Location 17,402,415 – 17,402,514
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 88.55
Mean single sequence MFE -20.83
Consensus MFE -15.07
Energy contribution -14.70
Covariance contribution -0.37
Combinations/Pair 1.12
Mean z-score -1.93
Structure conservation index 0.72
SVM decision value 0.45
SVM RNA-class probability 0.740747
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17402415 99 + 23771897
ACAGAGUCAGAAGCAGCAGCUAUUUCGAAAGAACUGGAAAGUAAUAAGCCAGAAGUAUCGGAUACGUCUGAUAAGCUAGAUAAAACAGGGGAUAAGGAA
.................((((..(((....)))((((..(....)...))))...(((((((....)))))))))))...................... ( -17.10)
>DroSim_CAF1 10509 99 + 1
ACCGAGUCAGAAGCAGCAGUUAUUUCGAAAGAACUGGAAAGUAAUAAGCCAGAAGAAUCGGAUAGGUCUGAUAAGCUAGAUAAAACAGGGGAUAAGGAA
.((((.((...............(((....)))((((..(....)...))))..)).))))....(((((......))))).................. ( -17.60)
>DroEre_CAF1 10918 99 + 1
ACCGAGUCAGAAGCAGCCGCUAUACCGAAAGAACUGGAAAGUAGUAAACCAGAAGAAUCGGAUAAAUCUGAUACGGUAGAUAAAUCAAGUGAUAAGGAA
((((.(((((((((....)))...((((.....((((...........)))).....)))).....)))))).))))......(((....)))...... ( -24.00)
>DroYak_CAF1 9505 99 + 1
ACCGAGUCAGAAGCAGCUGCUAUAUCGAAAGAACUGGAAUGUAAUAAGCCAGAAGAAUCGGAUAAGUCUGAUACGCUCGAUGUAACAAUUGAUAAGGAA
.((..(((((..((....))((((((((..(..((((...........))))....((((((....)))))).)..))))))))....)))))..)).. ( -24.60)
>consensus
ACCGAGUCAGAAGCAGCAGCUAUAUCGAAAGAACUGGAAAGUAAUAAGCCAGAAGAAUCGGAUAAGUCUGAUAAGCUAGAUAAAACAAGGGAUAAGGAA
.....(((((((((....)))...((((.....((((...........)))).....)))).....))))))........................... (-15.07 = -14.70 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:39 2006