Locus 6571

Sequence ID 3L_DroMel_CAF1
Location 17,395,480 – 17,395,577
Length 97
Max. P 0.773889
window10697

overview

Window 7

Location 17,395,480 – 17,395,577
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 81.72
Mean single sequence MFE -41.82
Consensus MFE -31.84
Energy contribution -32.90
Covariance contribution 1.06
Combinations/Pair 1.34
Mean z-score -1.76
Structure conservation index 0.76
SVM decision value 0.54
SVM RNA-class probability 0.773889
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17395480 97 + 23771897
UCCAGAGGUUCCGCCUCGGGUGCUUCUGUGGCCACCGCUUGGCUAUUAGCCUGGGCCAAGCGAAGGCCUCGUCGUAGGGCCAGCGGCUUUUGGAGAC
((((((((..((((....(((.((..((.((((..(((((((((.........)))))))))..)))).))....)).))).))))))))))))... ( -46.50)
>DroSec_CAF1 2639 97 + 1
UCCAGAGGCUCCGCCUCGGGUGCUUCUGUGGUCACCGCUUGGCUAUUAACUUGGGCUAAGUGAAGGCCUCGCCGCAGGGCCAGCGGCUUUUGGAGAC
((((((((((..(((.((((....)))).)))...(((((((((.........)))))))))..))))))(((((.......)))))...))))... ( -41.70)
>DroSim_CAF1 2623 97 + 1
UCCAGAGGCUCCGCCUCGGGUGCUUCUGUGGCCACCGCUUGGCUAUUAACUUGGGCCAAGUGAAGGCCUCGCCGCAGGGCCAGCGGCUUUUGGAGAC
((((((((((..(((.((((....)))).)))...(((((((((.........)))))))))..))))))(((((.......)))))...))))... ( -46.10)
>DroEre_CAF1 2652 97 + 1
UCCUGUGGCUCCGCCUCGGGUGCUUCUGUGACCACCGCUUGGCGUUCAACUUGGGCCAAGUGAAGGUCUCGUCGCAGGGCCAGCAGCUUUGGUAGAC
.((((((((..((((...)))).....(.((((..((((((((.(.......).))))))))..)))).)))))))))(((((.....))))).... ( -40.00)
>DroYak_CAF1 2580 97 + 1
UCCUGAGGCUCUGCCUCGGGUGCUUCUGUGGCCACCGCUUGGCCAUUAACUUGGGCCACGUGAAGGCCUCGACGCAGGGCCAGCGGCUUUGGUAGAC
.((((((((...))))))))....((((.((((..(((.(((((.........))))).)))..)))).).((.(((((((...)))))))))))). ( -42.90)
>DroAna_CAF1 4020 88 + 1
UCCAAUGGCUCUGCCUCUGGUG---------ACACUCCUUGAUUUUUAGCCUCCCCCGAGGCGAGGCCACGUCGCAGAGCCAGCGGCAUUUGGAGGC
((((((((((((((..(((...---------.))..............(((((((....)).)))))...)..))))))))).......)))))... ( -33.71)
>consensus
UCCAGAGGCUCCGCCUCGGGUGCUUCUGUGGCCACCGCUUGGCUAUUAACUUGGGCCAAGUGAAGGCCUCGUCGCAGGGCCAGCGGCUUUUGGAGAC
((((((((((..((....(((.((..((.((((..(((((((((.........)))))))))..)))).))....)).))).))))))))))))... (-31.84 = -32.90 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:38 2006