| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,389,399 – 17,389,516 |
| Length | 117 |
| Max. P | 0.899249 |
| Location | 17,389,399 – 17,389,516 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.22 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -16.24 |
| Energy contribution | -15.80 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17389399 117 + 23771897 -GUACACUAAGAAUACGCACUAUGACUUUGUUGAGCUCCUUCAUAAGCUUGAUAUUGUUAUUGUUGGCAAUUUCGAUCAUGGCAUUUUUGCCUCCAAUUUUCUCCAUGGUUUCCUUGA -.........(((...((((.(((((..(((..((((........))))..)))..))))).))..))...)))((((((((.....(((....)))......))))))))....... ( -25.10) >DroVir_CAF1 2035 117 + 1 -AUAUACUUUUCGCACAUACAAUAACUUUGUUGAGCUCUUUCAUUAAUUUGAUAUUGUUGUUGUUGGCAAUUUCGAUCAUGGCAUUCUUGCCGCCUAUUUUCUCCAUGGUCUCCUUGA -...........((.((.((((((((..(((..((............))..)))..))))))))))))......((((((((((....)))).............))))))....... ( -22.61) >DroGri_CAF1 2049 117 + 1 -CUAGAUUUAUGGUACACACAAUAACUUUGUUGAGUUCUUUCAUCAAUUUGAUGUUGUUGUUGUUGGCAAUUUCAAUCAUAGCAUUCUUGCCGCCAAUCUUCUCCAUGGUCUCCUUGA -..(((((.((((.....((((((((..(((..((((........))))..)))..)))))))).(((((.................)))))...........)))))))))...... ( -22.53) >DroWil_CAF1 17379 118 + 1 AUGCCUCUUUUACCACUUACAAUAACUUUAUUGAGCUCCUUCAUCAGUUUGAUAUUAUUAUUGUUGGCUAUCUCAAUCAUGGCAUUCUUGCCGCCUAUUUUCUCCAUUGUCUCUUUAA ..((........(((...(((((((...(((..((((........))))..)))...)))))))))).............((((....))))))........................ ( -19.60) >DroMoj_CAF1 2031 106 + 1 -AU-----------ACUCACAAUGACUUUAUUAAGUUCCUUCAUUAAUUUGAUAUUGUUGUUAUUGGCAAUUUCAAUCAUGGCAUUCUUGCCGCCUAUUUUCUCCAUGGUCUCCUUCA -..-----------.....(((((((..(((((((((........))))))))).....)))))))..............((((....))))(((............)))........ ( -17.30) >DroAna_CAF1 2010 118 + 1 AAUAUCUUUGCAGGACUUACAAUGACUUUGUUGAGUUCCUUCAUCAGUUUAAUAUUGUUAUUGUUGGCUAUCUCGAUCAUGGCAUUCUUCCCGCCAAUUUUCUCCAUGGUCUCCUUAA ...........((((((.((((((((..((((((..(........)..))))))..)))))))).)).......((((((((.....................))))))))))))... ( -24.00) >consensus _AUACACUUAUAGCACUCACAAUAACUUUGUUGAGCUCCUUCAUCAAUUUGAUAUUGUUAUUGUUGGCAAUUUCAAUCAUGGCAUUCUUGCCGCCAAUUUUCUCCAUGGUCUCCUUGA ..................((((((((..(((((((((........)))))))))..)))))))).(((............((((....)))))))....................... (-16.24 = -15.80 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:37 2006