Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,384,536 – 17,384,656 |
Length | 120 |
Max. P | 0.940051 |
Location | 17,384,536 – 17,384,656 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.91 |
Mean single sequence MFE | -33.31 |
Consensus MFE | -28.74 |
Energy contribution | -28.74 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.65 |
Structure conservation index | 0.86 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.940051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17384536 120 - 23771897 GCUCGUCCACUCCUCCGCUUUCCGGACUUACCGCCAAUUUCCCGAAGGGGAAGCCAUCAACUUUAUGCUUCGUGACUGAGUCAUCAGGUUUUUUACUCCAUCUCCCUCCGGUUUUGGCCC ....((((...............)))).....(((((....(((.(((((((((............)))))....((((....))))................)))).)))..))))).. ( -30.36) >DroSec_CAF1 11302 120 - 1 GCUCGCCCACUCCCCCGCUAUCCGGACUUUCCGCCAAUUUCCCGAGGGGGAAGCCAUCAACUUUGUGCUUCGUGACUGAGUCAUCAGGUUUUUUACUCCAUCUCCCUCCGGUUUUGGCCC ..............(((.....))).......(((((...((.(((((((((((((.......)).)))))....((((....))))...............)))))).))..))))).. ( -33.90) >DroSim_CAF1 11229 120 - 1 GCUCGCCCACUCCCCCGCUAUCCGGACUUUCCGCCAAUUUCCCGAAGGGGAAGCCAUCAACUUUGUGCUUCGUGACUGAGUCAUCAGGUUUUUUACUCCAUCUCCCUCCGGUUUUGGCCC ..............(((.....))).......(((((....(((.(((((((((((.......)).)))))....((((....))))................)))).)))..))))).. ( -31.30) >DroEre_CAF1 11496 118 - 1 GCUCGCCCACUG--CCGCUAUCCGGACUUUCCGGCAAUUUCCCGAGGGGGAAGCCAUCAACUUUGCGCUUCGUGACUGAGUCAUCAGGUUUUUUCCUCCAUCUCCCUCCGGUUUUGGCCU ....(((....(--(((....((((.....)))).........(((((((((((((.......)).)))))....((((....))))...............))))))))))...))).. ( -36.10) >DroYak_CAF1 13808 118 - 1 GCUCGCCCACUC--CCGCUAUACGGACUUUCCGCCAGUUUCCCGAGGGGGAAGCCAUCAACUUUGUGCUUCGUGACUGAGUCAUCAGGUUUUUUUCACCAUCUCCCUCCGGUUUUGGCCU ............--(((.....))).......(((((...((.(((((((((((((.......)).)))))((((((((....)))).......))))....)))))).))..))))).. ( -34.91) >consensus GCUCGCCCACUCC_CCGCUAUCCGGACUUUCCGCCAAUUUCCCGAGGGGGAAGCCAUCAACUUUGUGCUUCGUGACUGAGUCAUCAGGUUUUUUACUCCAUCUCCCUCCGGUUUUGGCCC ..............(((.....))).......(((((....(((.(((((((((((.......)).)))))....((((....))))................)))).)))..))))).. (-28.74 = -28.74 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:36 2006