| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,382,966 – 17,383,069 |
| Length | 103 |
| Max. P | 0.873815 |
| Location | 17,382,966 – 17,383,069 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 90.99 |
| Mean single sequence MFE | -27.81 |
| Consensus MFE | -21.28 |
| Energy contribution | -21.52 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17382966 103 + 23771897 ACGCUUUUUGUUUUGCUAUUUCUCAGCCGCCUUUUGGCCACUUUCUAGCAGCAGACUGUAGGAA--AAGAACUCUAAGAGCUGGAAUAGUCGAGCAAAUUGCACC ..((..(((((((.((((((.(.((((((((....)))...(((((.((((....)))).))))--)..........).))))))))))).)))))))..))... ( -33.70) >DroSec_CAF1 9767 102 + 1 ACGCUUUUUGUUUUGCUAUUUCCCAGUCGCCUUUUGGCCACUUUCUAGCAGCAGACUGUAGGAA--AAGAACUCUAAGAGCC-GAACAGUCGAGCAAAUUGCACC ..((..((((((((((((......(((.(((....))).)))...)))))...((((((.((..--.((....)).....))-..)))))))))))))..))... ( -29.40) >DroSim_CAF1 9658 102 + 1 ACGCUUUUUGUUUUGCUAUUUCCCAGCCGCCUUUUGGCCACUUUCUAGCAGCAGACUGUAGGAA--AAGAACUCUAAGAGCC-GAACAGUCGAGCAAAUUGCACC ..((..((((((((((((.......((((.....)))).......)))))...((((((.((..--.((....)).....))-..)))))))))))))..))... ( -27.54) >DroEre_CAF1 9977 104 + 1 ACGCUUUUUGUUUUGCUAUUUCCCAGCCGCCUUUUGGCCACUUUCUAGCAGCAGACUGUAAGACUGUAAGACUCUAAGAACC-GAACAGCCGAGCAAAUUGCACC ..((..(((((((.(((..(((......(((....))).((..(((.((((....)))).)))..))...............-))).))).)))))))..))... ( -25.10) >DroYak_CAF1 11116 96 + 1 ACGCUUUUUGUUUUGCUAUUUCCCAGCCGCCUUUUGGCCACUUUCUAGCAGCAGACUGU--------AAGACUCUUAGAACC-AAACAGCCGAGCAAAUUGCACC ..((..(((((((.(((...........(((....))).....(((.((((....))))--------.)))...........-....))).)))))))..))... ( -23.30) >consensus ACGCUUUUUGUUUUGCUAUUUCCCAGCCGCCUUUUGGCCACUUUCUAGCAGCAGACUGUAGGAA__AAGAACUCUAAGAGCC_GAACAGUCGAGCAAAUUGCACC ..((..(((((((.(((...........(((....))).....(((.((((....)))).)))........................))).)))))))..))... (-21.28 = -21.52 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:32 2006