| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,360,248 – 17,360,353 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 17,360,248 – 17,360,353 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 83.24 |
| Mean single sequence MFE | -31.61 |
| Consensus MFE | -21.80 |
| Energy contribution | -21.67 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17360248 105 - 23771897 UGAUACAUU---CUUGGCGCGCAGUGCAAUUAAUAGCGCUAAAGAAGUGCGAAGUUGGCCCAUUAAGUGGUCAAUCAAGCGAUGUUU--UGGCCACUUCUGAGCUGUUUC--- .((.((...---(((.((((..(((((........)))))......)))).)))..(((.((..((((((((((.((.....))..)--))))))))).)).))))).))--- ( -30.00) >DroSec_CAF1 42234 108 - 1 UGAUACAUUCUUCUUGGCGCGCAGUGCAAUUAAUAGCGCUAAAGAAGUGCGAAGUUGGCCCAUUAAGUGGUCAAUCAAGCGAUGUUU--UGGCCACUUCUGAGCUGAUUC--- .........(((((((((((...............))))).)))))).....(((..((.((..((((((((((.((.....))..)--))))))))).)).))..))).--- ( -32.16) >DroSim_CAF1 42558 108 - 1 UGAUACAUUCUUCUUGGCGCGCAGUGCAAUUAAUAGCGCUAAAGAAGUGCGAAGUUGGCCCAUUAAGUGGUCAAUCAAGCGAUGUUU--UGGCCACUUCUGAGCUGAUUC--- .........(((((((((((...............))))).)))))).....(((..((.((..((((((((((.((.....))..)--))))))))).)).))..))).--- ( -32.16) >DroEre_CAF1 48289 105 - 1 UGGUACAUU---CCUGGCGCGCACUGCAAUUAAUAGCGCUAAAGAAGUGCGAAGUUGGCCCAUUAAGUGGUCAAUCAAGCGAUGUUU--UGGCCACUUCAGAGCUGAUUC--- ..((((.((---(.((((((...............))))))..)))))))..(((..((.(...((((((((((.((.....))..)--)))))))))..).))..))).--- ( -31.36) >DroYak_CAF1 49105 101 - 1 UGAUACAUU---CUUGGCUGAUAC----AUUAAUAGCGCUGAAGAAGUGCGAAGUUGGCCUAUUAAGUGGUCAAUCAGGCGAUGUUU--UGGCCACUUCUAAACUGAUUC--- .........---..((((..(.((----(((....(((((.....)))))...(((((((........))))))).....))))).)--..))))...............--- ( -28.70) >DroAna_CAF1 42348 100 - 1 UGAUACAUU---CCUAGGAGGCAG---------UCGUGCUAAAUAAGUGCGAAGUUGGC-CAUUAAGUGGCUAAUCAAGACAUGUUUUCUGGCCACUUUGGGGCCGCUCUUGA .........---..((((((.(..---------(((..((.....))..)))....(((-(...(((((((((...((((....)))).)))))))))...))))))))))). ( -35.30) >consensus UGAUACAUU___CUUGGCGCGCAGUGCAAUUAAUAGCGCUAAAGAAGUGCGAAGUUGGCCCAUUAAGUGGUCAAUCAAGCGAUGUUU__UGGCCACUUCUGAGCUGAUUC___ ...................................(((((.....)))))..(((((((.(...(((((((((...((((...))))..)))))))))..).))))))).... (-21.80 = -21.67 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:21 2006