| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,952,606 – 1,952,722 |
| Length | 116 |
| Max. P | 0.753028 |
| Location | 1,952,606 – 1,952,722 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.24 |
| Mean single sequence MFE | -24.07 |
| Consensus MFE | -15.73 |
| Energy contribution | -15.40 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.753028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1952606 116 + 23771897 GUGGAUUUUUAUUUUCUCAGUGCUUUUCAUGUUUUGGUCA-AAAGCAUGUAUUUGAGCACCCCUCUUGAUGACGUCCAUCAUAAACAAAGUUGACUUAUGUCAACUGAAUGUAC-UAU ((((((..(((((......((((((..((((((((.....-)))))))).....)))))).......))))).)))))).....(((.(((((((....)))))))...)))..-... ( -32.12) >DroSec_CAF1 3942 103 + 1 GUGGAUUGUCCUUUUCCCAGUUUUUUU--UUUUUUAGUAAAAAAGUAUGUAUUU-------------GAUGAUGUCCAUCAUAAACAAAGUUGGCUAAUGUCAACUGAAUGUACAUAU (.(((.........))))......(((--(((......))))))((((((((.(-------------((((.....))))).......(((((((....)))))))....)))))))) ( -19.90) >DroSim_CAF1 3927 102 + 1 GUGGAUUGUCCUUUUCCCAGUGUUUU---UUUUUUGGUAAAAAAGUAUAUAUUU-------------GAUGAUGUCCAUCAUAAACAAAGUUGGCUAAUGUCAACUGAAUGUAUGUAU ..((.....))((((.((((......---....)))).))))...(((((((((-------------((((.....))))........(((((((....))))))))))))))))... ( -20.20) >consensus GUGGAUUGUCCUUUUCCCAGUGUUUUU__UUUUUUGGUAAAAAAGUAUGUAUUU_____________GAUGAUGUCCAUCAUAAACAAAGUUGGCUAAUGUCAACUGAAUGUAC_UAU (.(((.........))))..........................((((((((...............((((.....))))........(((((((....)))))))....)))))))) (-15.73 = -15.40 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:45 2006