| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,337,315 – 17,337,423 |
| Length | 108 |
| Max. P | 0.799646 |
| Location | 17,337,315 – 17,337,423 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 74.79 |
| Mean single sequence MFE | -32.95 |
| Consensus MFE | -20.58 |
| Energy contribution | -20.20 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17337315 108 + 23771897 UCUCCAUAUUUUGGAAGUGUCCGCGGAAGAUGGGCCGUUGAUUACCGGAAAUGCCGACGCGUACCAAAACGCGAGUGGUGUUGGACAAGGGAGGAAUGCCUAUG------AAGA (((((...........(.((((((....).))))))(((.(.((((((.....))..(((((......)))))...)))).).)))...)))))..........------.... ( -31.00) >DroPse_CAF1 21964 108 + 1 UCUCCAUAUUUUGGAAGUGUCCCCUGAAAAUGGGACGCUGAUUGCCAGAGAUGCCCACUCGAACCAAGACACGAGUGGUGUUUGACAAAGGCGGAACACCUUAA------GAGA ((((....((((((.((((((((.(....).)))))))).....))))))..(((((((((..........))))))).))......((((.......))))..------)))) ( -34.70) >DroWil_CAF1 22799 108 + 1 UCUCAACAUUUUGGAAGUGACCCUUAAAGAUGGGUCGCUGAUUGCCCGAAAUGCCAACGCGAACAAGAACUCUGGUGGAAUUGGUCAGCGGUGGAAUGCCUAAA------CAAA ......((((((((.((((((((........))))))))......))))))))(((.(((((.(((..((....))....))).)).))).)))..........------.... ( -31.70) >DroMoj_CAF1 30348 114 + 1 UCUCGACAUUCUGGAAGUGACCCUUGAAAAUGGGUCGCUGAUUGCCGGAGAUGCCGACGCGUAUCAGAACACGUGUGGUAUUAGUGAGUGGGGGAAUGCCUUGAAAUAAGUAGG ((((.((..(((((.((((((((........)))))))).....)))))((((((.((((((........)))))))))))).....)).)))).................... ( -40.10) >DroAna_CAF1 18238 100 + 1 UCUCAACAUUCUGGAAGUGUCCUCUGAAAAUAGGUCUUUGGUUUCCAGAAAUACCCACACGAACAAGGACUCGAGUGGUGUUGGUCAAAGGAGGAAUGCC-------------- ..(((((((((((((((.(.(((.(....).))).).....)))))))))....((((.(((........))).))))))))))................-------------- ( -25.50) >DroPer_CAF1 21762 108 + 1 UCUCCAUAUUUUGGAAGUGUCCCCUGAAAAUGGGACGCUGAUUGCCAGAGAUGCCCACUCGAACCAAGACACGAGUGGUGUUUGACAAAGGCGGAACACCUUAA------GAGA ((((....((((((.((((((((.(....).)))))))).....))))))..(((((((((..........))))))).))......((((.......))))..------)))) ( -34.70) >consensus UCUCCACAUUUUGGAAGUGUCCCCUGAAAAUGGGUCGCUGAUUGCCAGAAAUGCCCACGCGAACCAAAACACGAGUGGUGUUGGACAAAGGAGGAAUGCCUUAA______GAGA (((......(((((.((((((((........)))))))).....)))))((((((.((.(((........))).))))))))..........)))................... (-20.58 = -20.20 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:18 2006