Locus 6556

Sequence ID 3L_DroMel_CAF1
Location 17,327,654 – 17,327,758
Length 104
Max. P 0.521284
window10674

overview

Window 4

Location 17,327,654 – 17,327,758
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 80.87
Mean single sequence MFE -19.94
Consensus MFE -12.68
Energy contribution -14.20
Covariance contribution 1.52
Combinations/Pair 1.18
Mean z-score -1.65
Structure conservation index 0.64
SVM decision value -0.02
SVM RNA-class probability 0.521284
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17327654 104 + 23771897
CAAUCUCAACUGAAGAUUACAAUAAGACAGUCUUAUCCGUUAAUAGAGCUGUCAUACUGCAAAGCCUUACAUUCAAAGGUUUUAAAGUUUUAAAAAAAGGCGUA
.((((((....).))))).......(((((..((((......))))..)))))..(((..((((((((.......))))))))..)))................ ( -19.70)
>DroSec_CAF1 9332 104 + 1
CAAUCUCAACUGAAGAUUACAAUAAGACAGUCUUAUCCGUUAAUAGAGCUGUCAUAUUGAAAAAUCUUAGAUCUUAAGGCUUUAAAGUUUUAAAAACAGACGAA
.....((..(((((((((.(((((.(((((..((((......))))..))))).)))))...)))))).....((((((((....))))))))...)))..)). ( -24.00)
>DroSim_CAF1 9224 104 + 1
CAAUCUCAACUGAAGACUACAAUAAGACAGUCUUAUCCGUUAAUAGAGCUGUCAUAUUGAAAAAUCUUAGAUCUUAAGGCUUUAAAGUUUUAAAAACAGACGAA
.....((..(((((((...(((((.(((((..((((......))))..))))).))))).....)))).....((((((((....))))))))...)))..)). ( -21.40)
>DroEre_CAF1 15808 91 + 1
CAAUCGCGACUGAAGAUUACAAUAAGUCUGUCUUAGCCCUUAAUAGAGCUGUCAUAUGUGUAAGCCUUACUGCCAGAGGUUUUAAAGUUUU-------------
....((((((...(((((......)))))))).((((.((....)).))))......))).(((((((.......))))))).........------------- ( -14.60)
>DroYak_CAF1 15947 104 + 1
CAAUCUCCACUGGAGAUUACAAUAAGACUGUCCUAUCCCUUAAUAGAGCUGUCAUAUUAGUAAGCCUUCCUUCCAAAGGUUUUAAAGUUUUAAAAAAAUGCGAG
.(((((((...)))))))((((((.(((.(..((((......))))..).))).)))).))(((((((.......)))))))...................... ( -20.00)
>consensus
CAAUCUCAACUGAAGAUUACAAUAAGACAGUCUUAUCCGUUAAUAGAGCUGUCAUAUUGAAAAGCCUUACAUCCAAAGGUUUUAAAGUUUUAAAAAAAGACGAA
............((((((.(((((.(((((..((((......))))..))))).))))).((((((((.......))))))))..))))))............. (-12.68 = -14.20 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:15 2006