Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,305,130 – 17,305,274 |
Length | 144 |
Max. P | 0.941249 |
Location | 17,305,130 – 17,305,234 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 81.73 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -21.40 |
Energy contribution | -21.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.84 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17305130 104 + 23771897 U----------AAAAAUUAUACAUUCCUUAGCGCACUGGGAUGACUGGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAAC .----------..........((((((..........)))))).((((((...((((.((........)).)))).((((((.......)))))).......))))))...... ( -31.20) >DroSec_CAF1 4000 95 + 1 U----------AAAAAUUUUACAUUCUUCAGCGCACU---------UGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAAC .----------.........................(---------(((....((((.((........)).)))).((((((.......))))))..............)))). ( -21.90) >DroEre_CAF1 2583 102 + 1 UUUAUCAGAGCACAAAAAAU--GUUCU-UUGUCCACU---------UGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAAC .......(((((((((....--....)-))))((...---------.))))))((((.((........)).)))).((((((.......))))))................... ( -27.00) >DroYak_CAF1 4223 92 + 1 A----------AAAAAAAUU--AUUCU-CAUUCCACU---------UGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAAC .----------.........--.....-........(---------(((....((((.((........)).)))).((((((.......))))))..............)))). ( -21.90) >consensus U__________AAAAAAAAU__AUUCU_CAGCCCACU_________UGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAAC ................................................((.((((((.((........)).)))).((((((.......))))))............))))... (-21.40 = -21.40 + 0.00)
Location | 17,305,154 – 17,305,274 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.01 |
Mean single sequence MFE | -36.54 |
Consensus MFE | -32.28 |
Energy contribution | -32.44 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.12 |
Mean z-score | -1.62 |
Structure conservation index | 0.88 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941249 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17305154 120 + 23771897 ACUGGGAUGACUGGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAACGAGCCGGUUUGAACCUCAGUCGACUAAUUACGCAAUCUAA ..(((..(((((((((((((((((((.......)))))((..((((((.......)))))).))..............)))))))(((....)))))))))).))).............. ( -41.80) >DroSec_CAF1 4024 111 + 1 ACU---------UGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAACGAGCCGGAUUGAACCGCAGUCGACUAAUUAGGCAAUCUAU ...---------..((((((((((((.......)))))((..((((((.......)))))).))..............)))))))((((((..((..(((......))).)))))))).. ( -35.90) >DroSim_CAF1 2960 111 + 1 ACU---------UGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAACGAGCCGGAUUGAACCGCAGUCGACUAAUUAGGCAAUCUAG ...---------..((((((((((((.......)))))((..((((((.......)))))).))..............)))))))((((((..((..(((......))).)))))))).. ( -35.90) >DroEre_CAF1 2614 111 + 1 ACU---------UGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAACGAGCCGUGCUGAACGCCGGUUGACUAAUUACUCAAUUUAA ...---------..((((((((((((.......)))))((..((((((.......)))))).))..............)))))))(.((.....)))((((((........))))))... ( -33.40) >DroYak_CAF1 4244 111 + 1 ACU---------UGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAACGAGCCGGGUUGAACGGCCGUCGACUAAUUACUCAAUCUAA ...---------..((((((((((((.......)))))((..((((((.......)))))).))..............))))))).((((((.(....)))))))............... ( -35.70) >consensus ACU_________UGGGCUCGUCCGGGAAUUGAACCCGGGACCUCUCGCACCCGAAGCGAGAAUCAUACCUCUAGACCAACGAGCCGGAUUGAACCGCAGUCGACUAAUUACGCAAUCUAA ..............((((((((((((.......)))))((..((((((.......)))))).))..............))))))).(((((.....)))))................... (-32.28 = -32.44 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:12 2006