Locus 6552

Sequence ID 3L_DroMel_CAF1
Location 17,303,819 – 17,303,921
Length 102
Max. P 0.500000
window10668

overview

Window 8

Location 17,303,819 – 17,303,921
Length 102
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 83.21
Mean single sequence MFE -33.22
Consensus MFE -22.23
Energy contribution -22.53
Covariance contribution 0.31
Combinations/Pair 1.19
Mean z-score -1.73
Structure conservation index 0.67
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17303819 102 - 23771897
GACGACAUACCCAUCAUCAACUGGCACUCCUCCUUCGAGGACUCCUGCUGGGGCUCGCAAUCCAUGCGCCGCAGCCCCAGUCCCACAAGGACGCCG------CAGCAG
......................(((..(((((....))))).(((((((((((((((((.....))))....)))))))))......)))).))).------...... ( -34.50)
>DroSec_CAF1 2685 102 - 1
GACGACAUACCCAUCAUCAACUGGCACUCCUCCUUCGAGGACUCGUGCUGGGGCUCGCAAUCCAUGCGCCGCAGUCCAAGUCCCACAAGGACGCCC------CAGCAG
.((((.....(((........)))...(((((....))))).))))((((((((.((((.....))))...........((((.....))))))))------)))).. ( -37.30)
>DroEre_CAF1 1218 102 - 1
GAUGACAUACCCAUCAUCAACUGGCACUCCUCCUUUGAGGACUCCUGCUGGGGCUCGCAGUCCAUGCGCCGCAGCCCCAGUCCCACAAGAACGCCG------CAACAG
(((((........)))))....(((..(((((....))))).....(((((((((((((.....))))....)))))))))...........))).------...... ( -36.70)
>DroWil_CAF1 1718 102 - 1
GAUGAUACUCCCAUUAUUAAUUGGCAUUCAUCUUUUGAGGACUCCUGCUGGGGUUCACAGUCCAUGCGUCGCAGUCCUAGUCCCAUGCGUACCCCU------CAACAG
(((((.....(((........)))...)))))..((((((.....(((((((..(...((..(.(((...))))..)))..)))).)))....)))------)))... ( -25.10)
>DroYak_CAF1 2701 102 - 1
GAUGACAUACCCAUCAUCAACUGGCACUCCUCCUUUGAGGACUCCUGCUGGGGCUCGCAGUCAAUGCGGCGCAGCCCUAGUCCCACAAGGACGCCG------CAGCAG
(((((........)))))....(((..(((((....))))).((((((((((((((((.((....)).))).)))))))))......)))).))).------...... ( -38.70)
>DroAna_CAF1 1245 108 - 1
GACGAUGUGCCCUAUAUCAAUUGGCAUUCCUCCUUUGAGGACUCUUGUUGGGGCUCUCAGUCUAUGCGCCGCAGUCCCAGUCCGACGCGAACUCCCACACAUCAGCAG
...((((((..............((((.......(((((..((((....))))..)))))...))))..(((.(((.......))))))........))))))..... ( -27.00)
>consensus
GACGACAUACCCAUCAUCAACUGGCACUCCUCCUUUGAGGACUCCUGCUGGGGCUCGCAGUCCAUGCGCCGCAGCCCCAGUCCCACAAGGACGCCG______CAGCAG
......................(((..(((((....))))).....(((((((((((((.....))))....)))))))))...........)))............. (-22.23 = -22.53 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:10 2006