| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,302,087 – 17,302,207 |
| Length | 120 |
| Max. P | 0.662437 |
| Location | 17,302,087 – 17,302,207 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.64 |
| Mean single sequence MFE | -32.70 |
| Consensus MFE | -30.66 |
| Energy contribution | -30.33 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17302087 120 - 23771897 UCCGAAAGUGACAAAAUUAAUGGUUUCCGCCGACGCUGUCGACAUUUUGUCGAGUGAGAGACAUUGAGAAAAUGCUCCAAAGUAGUGCAAAAUGAAGGAGUCGCAAACGGAGACCCCUAA (((....).))..........((((((((.((((....((..(((((((((...((.(((.((((.....))))))))).....).))))))))..)).))))....))))))))..... ( -33.40) >DroSim_CAF1 2557 112 - 1 -------GUGACAAAAUUAAUGGUUUCCGCCGACGCUGUCGACAUUUUGUCGAGUGAGAGACAUUGAGAAAAUGCUCCAAAGUAGUGCAAAAUGAAGAAGUCGCAAACGGAGGCCCC-AA -------..............((((((((.((((....((..(((((((((...((.(((.((((.....))))))))).....).))))))))..)).))))....))))))))..-.. ( -32.30) >DroEre_CAF1 6292 118 - 1 UCCGAAAGUGACAAAAUUAAUGGUUUCCGCCGACGCUGUCGACAUUUUGUCGAGUGAGAGACACUGAGAAAAUGCUCCAAAGUGGUGCAAAAUGAAGGAGUCGCA-AUGGAGGCCCC-UA (((....).))..........((((((((.((((.((.(((..(((((.((.((((.....)))))).)))))((.((.....)).))....))).)).))))..-.))))))))..-.. ( -32.40) >consensus UCCGAAAGUGACAAAAUUAAUGGUUUCCGCCGACGCUGUCGACAUUUUGUCGAGUGAGAGACAUUGAGAAAAUGCUCCAAAGUAGUGCAAAAUGAAGGAGUCGCAAACGGAGGCCCC_AA .....................((((((((.((((....((..((((((((....((.(((.((((.....))))))))).......))))))))..)).))))....))))))))..... (-30.66 = -30.33 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:09 2006