Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,949,754 – 1,949,884 |
Length | 130 |
Max. P | 0.723636 |
Location | 1,949,754 – 1,949,855 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 78.37 |
Mean single sequence MFE | -35.05 |
Consensus MFE | -23.07 |
Energy contribution | -23.05 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.32 |
Mean z-score | -1.21 |
Structure conservation index | 0.66 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543481 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1949754 101 + 23771897 AUCCGUGGUGGUCAUGUGGAUAUCACCAUUUUGGGCGCCAUGGAGGUGUCGGCCACAGGCGAUCUGGCCAACUGGAUGAUUCCUGUAAGUU----AAUC-CAU--UAU- .(((((((((.(((.((((......))))..))).)))))))))((.((..((.(((((.((((...((....))..)))))))))..)).----.)))-)..--...- ( -38.20) >DroGri_CAF1 1318 103 + 1 AUUCGUGGCGGUCACGUUGACCUGACCAUUUUGGGCGCCAUGGAAGUGUCGGCCACUGGUGACUUGGCCAACUGGAUGAUACCCGUAAGUG----AAG--AUUAGCAGC .((((((((((((.....))))...((.....))..)))))))).((((((((((..(....).))))).(((..(((.....))).))).----..)--))..))... ( -34.40) >DroEre_CAF1 1152 101 + 1 AUUCGUGGCGGCCACGUGGAUUUAACCAUCUUGGGCGCCAUGGAGGUGUCGGCCACAGGCGAUCUGGCCAACUGGAUGAUUCCUGUGAGUA----AAUC-UAU--CGU- .(((((((((.(((.((((......))))..))).)))))))))((((...((((((((.((((...((....))..)))))))))).)).----....-)))--)..- ( -41.20) >DroWil_CAF1 1177 106 + 1 AUACGUGGCGGUCACGUUGAUAUAACCAUUCUGGGUGCCAUGGAAGUCUCAGCCACAGGCGAUUUGGCCAACUGGAUGAUACCGGUAUGAAUUGAAAUUACUU--UAU- ...(((((((.(((...((.......))...))).)))))))(((((.((((.....(((......))).(((((......))))).....))))....))))--)..- ( -27.00) >DroYak_CAF1 1152 101 + 1 AUCCGAGGUGGUCAUGUGGAUAUCACCAUUUUGGGCGCCAUGGAGGUGUCGGCCACCGGCGAUCUGGCCAACUGGAUGAUUCCCGUAAGUA----ACUC-UUG--UGU- (((((.(((((((..((((......))))....((((((.....)))))))))))))(((......)))...)))))......((((((..----...)-)))--)).- ( -35.30) >DroAna_CAF1 1175 103 + 1 AUUCGCGGCGGCCAUGUGGACCUCACGAUUCUUGGCGCCAUGGAAGUUUCUGCCACUGGCGACCUGGCCAACUGGAUGAUUCCUGUAAGUG--GGAGCC-CUU--CUU- ......((((.(((((((.....)))).....)))))))..(((((...((.((((((((......))).((.(((....))).)).))))--).))..-)))--)).- ( -34.20) >consensus AUUCGUGGCGGUCACGUGGAUAUCACCAUUUUGGGCGCCAUGGAAGUGUCGGCCACAGGCGAUCUGGCCAACUGGAUGAUUCCUGUAAGUA____AAUC_CUU__CAU_ .(((((((((.(((.(((.....))).....))).)))))))))...((((.(((..(((......)))...))).))))............................. (-23.07 = -23.05 + -0.02)
Location | 1,949,794 – 1,949,884 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 82.00 |
Mean single sequence MFE | -25.52 |
Consensus MFE | -18.15 |
Energy contribution | -18.84 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.19 |
Mean z-score | -1.81 |
Structure conservation index | 0.71 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1949794 90 - 23771897 AGUUUGCAAGUGAUUAAGCUUAAUGGAUGAUAAUGGAUUAACUUACAGGAAUCAUCCAGUUGGCCAGAUCGCCUGUGGCCGACACCUCCA .(.(..((.((((((..(((...((((((((..((..........))...))))))))...)))..)))))).))..).).......... ( -26.30) >DroSec_CAF1 1199 90 - 1 AGUUUGUAAGUAAUUAAACAUAAUGGAUGAUGAUGGAUUUACUUACAGGAAUCAUCCAGUUGGCCAGAUCGCCUGUGGCCGACACCUCCA .(((((........)))))....((((((((..((..........))...))))))))((((((((.(.....).))))))))....... ( -28.00) >DroSim_CAF1 1196 90 - 1 AGUUUGUAAGUAAUUCAACAUAAUGGAUGAUGACGGAUUUACUUACAGGAAUCAUCCAGUUGGCCAGAUCGCCUGUGGCCGACACCUCCA ....(((((((((.((..(((........)))...)).)))))))))(((....))).((((((((.(.....).))))))))....... ( -28.00) >DroEre_CAF1 1192 90 - 1 UGUGUUUGAGUAAUUAAACUUAAUGGGUCACGAUAGAUUUACUCACAGGAAUCAUCCAGUUGGCCAGAUCGCCUGUGGCCGACACCUCCA ...((((((....)))))).....((((...(((.(((((........))))))))..((((((((.(.....).))))))))))))... ( -24.80) >DroYak_CAF1 1192 90 - 1 UGUUUGUAAGUAACUAAACUCAAUGGGUCACACAAGAGUUACUUACGGGAAUCAUCCAGUUGGCCAGAUCGCCGGUGGCCGACACCUCCA ....(((((((((((..(((.....)))........)))))))))))(((....))).((((((((.........))))))))....... ( -26.50) >DroPer_CAF1 1199 88 - 1 CAUUUUUGAGUAACAAUGAC--CUGCGGGAACAAUCAUUUGCUUACAGGAAUCAUCCAGUUGGCCAGAUCACCCGUGGCGGAGACCUCCA ....................--(..((((....(((....(((.((.(((....))).)).)))..)))..))))..).(((....))). ( -19.50) >consensus AGUUUGUAAGUAAUUAAACUUAAUGGAUGAUGAUGGAUUUACUUACAGGAAUCAUCCAGUUGGCCAGAUCGCCUGUGGCCGACACCUCCA ....(((((((((.........................)))))))))(((....))).((((((((.(.....).))))))))....... (-18.15 = -18.84 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:44 2006