Locus 6547

Sequence ID 3L_DroMel_CAF1
Location 17,298,548 – 17,298,655
Length 107
Max. P 0.954123
window10650 window10651

overview

Window 0

Location 17,298,548 – 17,298,655
Length 107
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 96.28
Mean single sequence MFE -38.80
Consensus MFE -36.03
Energy contribution -36.37
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.47
Structure conservation index 0.93
SVM decision value 1.23
SVM RNA-class probability 0.934105
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17298548 107 + 23771897
CGUCCAGGAGGAGGUCCUGGGCGUAUGGGAGG-GGGAAUGACAAUCCGGGCCAGGAGCUGUGACAAAACACUGGAAGCCAAAACUGACAGUGACAACUGGCUGGAAUG
(((((((((.....)))))))))....(((..-(.......)..))).((((((..(......)....(((((..((......))..)))))....))))))...... ( -36.10)
>DroSec_CAF1 5545 107 + 1
CGGCCAGGAGGAGGUCCUGGGCGAUGGGGAGG-GGGAAUGACAAUCCGGGCCAGGAGCUGUGACAAAACACUGGAAGCCAAAACUGACAGUGACAACUGGCUGGAAUG
(((((((..(.((.((((((.(..((((...(-........)..))))).)))))).)).........(((((..((......))..))))).)..)))))))..... ( -39.90)
>DroSim_CAF1 5546 108 + 1
CGGCCAGGAGGAGGUCCUGGGCGAAGGGGAGGUGGGGAUGACAAUCCGGGCCAGGAGCUGUGACAAAACACUGGAAGCCAAAACUGACAGUGACAACUGGCUGGAAUG
(((((((..(.((.((((((.(...(((...((.......))..))).).)))))).)).........(((((..((......))..))))).)..)))))))..... ( -40.40)
>consensus
CGGCCAGGAGGAGGUCCUGGGCGAAGGGGAGG_GGGAAUGACAAUCCGGGCCAGGAGCUGUGACAAAACACUGGAAGCCAAAACUGACAGUGACAACUGGCUGGAAUG
(((((((..(.((.((((((.(.....(((....(......)..))).).)))))).)).........(((((..((......))..))))).)..)))))))..... (-36.03 = -36.37 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 17,298,548 – 17,298,655
Length 107
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 96.28
Mean single sequence MFE -30.63
Consensus MFE -30.63
Energy contribution -30.63
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 1.00
SVM decision value 1.44
SVM RNA-class probability 0.954123
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17298548 107 - 23771897
CAUUCCAGCCAGUUGUCACUGUCAGUUUUGGCUUCCAGUGUUUUGUCACAGCUCCUGGCCCGGAUUGUCAUUCCC-CCUCCCAUACGCCCAGGACCUCCUCCUGGACG
((.(((.(((((..(((((((..(((....)))..)))))..........))..)))))..))).))........-.........((.((((((.....)))))).)) ( -30.90)
>DroSec_CAF1 5545 107 - 1
CAUUCCAGCCAGUUGUCACUGUCAGUUUUGGCUUCCAGUGUUUUGUCACAGCUCCUGGCCCGGAUUGUCAUUCCC-CCUCCCCAUCGCCCAGGACCUCCUCCUGGCCG
((.(((.(((((..(((((((..(((....)))..)))))..........))..)))))..))).))........-.........((.((((((.....)))))).)) ( -30.50)
>DroSim_CAF1 5546 108 - 1
CAUUCCAGCCAGUUGUCACUGUCAGUUUUGGCUUCCAGUGUUUUGUCACAGCUCCUGGCCCGGAUUGUCAUCCCCACCUCCCCUUCGCCCAGGACCUCCUCCUGGCCG
((.(((.(((((..(((((((..(((....)))..)))))..........))..)))))..))).))..................((.((((((.....)))))).)) ( -30.50)
>consensus
CAUUCCAGCCAGUUGUCACUGUCAGUUUUGGCUUCCAGUGUUUUGUCACAGCUCCUGGCCCGGAUUGUCAUUCCC_CCUCCCCUUCGCCCAGGACCUCCUCCUGGCCG
((.(((.(((((..(((((((..(((....)))..)))))..........))..)))))..))).))..................((.((((((.....)))))).)) (-30.63 = -30.63 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:54 2006