Locus 654

Sequence ID 3L_DroMel_CAF1
Location 1,947,484 – 1,947,584
Length 100
Max. P 0.801438
window998

overview

Window 8

Location 1,947,484 – 1,947,584
Length 100
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 74.70
Mean single sequence MFE -31.84
Consensus MFE -19.10
Energy contribution -20.10
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.60
SVM decision value 0.62
SVM RNA-class probability 0.801438
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1947484 100 - 23771897
CAAAAACCACCUGCUGACGUCACAGCCAGUUGACUACCUUACAUACACCUUAGUUUG--------------------GUUGGCUGGCGUGGAUCUGCACGAAGUAGUCCUUGUCCAGGAU
.........((((..((((.....((((((..((((..(((.........)))..))--------------------))..))))))..(((.((((.....))))))).)))))))).. ( -31.80)
>DroSec_CAF1 14844 100 - 1
UAGAAACCACCUGCUGACGUCACAGCCAGUUCACUACCUUUUAUACACCUUCGUUUU--------------------GUUUGCUGGCGAGGAUCUGCACGAAGUAGUCCUUGUCCAGGAU
.........((((..(((......((((((..((.......................--------------------))..))))))(((((.((((.....)))))))))))))))).. ( -27.70)
>DroSim_CAF1 14847 100 - 1
CAAAAACCACCUGCUAACUUCAGAGCCAAUUUACUACCUUUUAUACACCUUAGUUUU--------------------CUUGGCUGGCGAGGAUCUGCACGAAGUAGUCCUUGUCCAGGAU
.........((((..........((((((...((((..............))))...--------------------.))))))((((((((.((((.....)))))))))))))))).. ( -28.34)
>DroEre_CAF1 14983 110 - 1
CAUAAGCCAGCUGCUGACGUCACAGCCAGUGCCCU----------CACCUGAGUAUUGGUGUUGAACUCGGUCCGCUGUGGGCUGGCGAGGAUCUGCUCGAAGGUGUCCUUGUCCAGGAA
......(((((.(((((..(((..((((((((.(.----------.....).))))))))..)))..)))))..)))).)..(((((((((((..(((....)))))))))).))))... ( -39.50)
>consensus
CAAAAACCACCUGCUGACGUCACAGCCAGUUCACUACCUUUUAUACACCUUAGUUUU____________________GUUGGCUGGCGAGGAUCUGCACGAAGUAGUCCUUGUCCAGGAU
............((((......))))........................................................((((((((((.((((.....)))))))))).))))... (-19.10 = -20.10 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:42 2006