| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,282,958 – 17,283,103 |
| Length | 145 |
| Max. P | 0.938045 |
| Location | 17,282,958 – 17,283,063 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.95 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -18.59 |
| Energy contribution | -18.47 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.938045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17282958 105 + 23771897 GCAGU----------AGGAAAUGCAAUAAUGUAACGAGUAAUUGUGCAAAA-----AAAUAUGAAAAGCAAUAAAGAACGCGCAGUUACGCAAAGCGUAGUGGGUGGUCAAAGGCCAUGG (((..----------......)))....((((.....((((((((((....-----...(((........)))......)))))))))).....)))).....(((((.....))))).. ( -22.42) >DroSec_CAF1 166674 110 + 1 GCAGU----------AGGAAAUGCAAUAAUGUAACGAGUAAUUGUGCAAAAAAAAAAAAUAGGAAAAGCAAUAAAGAACGCGCAGUUACGCAAAGCGUAGUGGGCGGUCAAAGGCCAUGG ((.((----------(.....))).....((((.(((....)))))))...................))..........((.((.((((((...)))))))).))(((.....))).... ( -22.50) >DroSim_CAF1 162860 106 + 1 GCAGU----------AGGAAAUGCAAUAAUGUAACGAGUAAUUGUGCAAAA----AAAAUACGAAAAGCAAUAAAGAACGCGCAGUUACGCAAAGCGUAGUGGGCGGUCAAAGGCCAUGG ((.((----------(.....))).....((((.(((....)))))))...----............))..........((.((.((((((...)))))))).))(((.....))).... ( -22.50) >DroEre_CAF1 169704 105 + 1 GCAGU----------AGGAAAUGUAAUAAUGUAAAGAGUAAUUGUGCAAAA-----AAAUACGAAAAGCAAUAAAGAACGGGCAGUUACGCAAAGCGUAGUGGGCGGUCAAAGGCCAUGG (((..----------......)))....((((.....((((((((.(....-----.......................).)))))))).....)))).((((.(.......).)))).. ( -15.63) >DroYak_CAF1 174786 117 + 1 GCAGUAUGCUCCUAUAGGAAAUGCAAUAAUGUAAAGAGUAAUUGUGCAAAAA---AAAAUAUGAAAAGCAAUAAAGAACGCGCAGUUACGCAAAGCGUAGUGGGCGGUCAAAGGCCAUGG .((.((((((((....)))..((((....))))..(.((((((((((.....---........................)))))))))).)...))))).))(((........))).... ( -27.05) >consensus GCAGU__________AGGAAAUGCAAUAAUGUAACGAGUAAUUGUGCAAAA____AAAAUACGAAAAGCAAUAAAGAACGCGCAGUUACGCAAAGCGUAGUGGGCGGUCAAAGGCCAUGG ......................((.((.((((.....((((((((((................................)))))))))).....)))).))..))(((.....))).... (-18.59 = -18.47 + -0.12)
| Location | 17,282,988 – 17,283,103 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 97.13 |
| Mean single sequence MFE | -29.52 |
| Consensus MFE | -28.34 |
| Energy contribution | -28.34 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17282988 115 + 23771897 AUUGUGCAAAA--AAAUAUGAAAAGCAAUAAAGAACGCGCAGUUACGCAAAGCGUAGUGGGUGGUCAAAGGCCAUGGAAUCUGGAGAGGAUAACGGCAAGGACACCACUGCCAGCAG ....(((....--.......................(((......)))...(.(((((((...(((....(((..(..((((.....))))..))))...))).)))))))).))). ( -29.60) >DroSim_CAF1 162890 116 + 1 AUUGUGCAAAA-AAAAUACGAAAAGCAAUAAAGAACGCGCAGUUACGCAAAGCGUAGUGGGCGGUCAAAGGCCAUGGAAUCUGGCGAGGAUAACGGCAAGGACACCACUGCCAGCAG ....(((....-........................(((......)))...(.(((((((...(((....(((..(..((((.....))))..))))...))).)))))))).))). ( -29.60) >DroEre_CAF1 169734 115 + 1 AUUGUGCAAAA--AAAUACGAAAAGCAAUAAAGAACGGGCAGUUACGCAAAGCGUAGUGGGCGGUCAAAGGCCAUGGAAUCUGGCGAGGAUAACGGCAAGGACACCACUGCCAGCAG ....(((....--.....((...............))((((..(((((...)))))((((...(((....(((..(..((((.....))))..))))...))).)))))))).))). ( -29.26) >DroYak_CAF1 174826 117 + 1 AUUGUGCAAAAAAAAAUAUGAAAAGCAAUAAAGAACGCGCAGUUACGCAAAGCGUAGUGGGCGGUCAAAGGCCAUGGAAUCUGGCGAGGAUAACGGCAAGGACACCACUGCCAGCAG ....(((.............................(((......)))...(.(((((((...(((....(((..(..((((.....))))..))))...))).)))))))).))). ( -29.60) >consensus AUUGUGCAAAA__AAAUACGAAAAGCAAUAAAGAACGCGCAGUUACGCAAAGCGUAGUGGGCGGUCAAAGGCCAUGGAAUCUGGCGAGGAUAACGGCAAGGACACCACUGCCAGCAG ....(((.................((.......(((.....))).......))(((((((...(((....(((..(..((((.....))))..))))...))).)))))))..))). (-28.34 = -28.34 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:31 2006