Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,279,474 – 17,279,567 |
Length | 93 |
Max. P | 0.690038 |
Location | 17,279,474 – 17,279,567 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.03 |
Mean single sequence MFE | -34.00 |
Consensus MFE | -20.60 |
Energy contribution | -20.76 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.92 |
Structure conservation index | 0.61 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17279474 93 + 23771897 CGUAGUC-----GUCCGGGGAGCCGAGAAAGAAA------------------AGAGGAACGGAAGCGGGC----GAAUGUCCCACGGACAUACAGCUGUCCGUCCGGAUGAGUUUGAAGA ((.(.((-----((((((....))..........------------------...(((.((((....(((----..((((((...))))))...))).))))))))))))).).)).... ( -31.60) >DroSec_CAF1 163172 93 + 1 CGGAGUC-----GUCCGGGAAGCCCAGAAAGCAA------------------AGAGGAACGGAAGCGGGA----GAAUAUCCCACGGACAUACAGCUGUCCGUCCGGAUGAGUUUGAAGA ((((.((-----(((((((...))).........------------------...(((.(((((((((((----.....))))..(......).))).))))))))))))).)))).... ( -35.40) >DroSim_CAF1 158242 93 + 1 CGGAGUC-----GUCCGGGAAGCCCAGAAAGCAA------------------AGAGGAACGGAAGCGGGC----GAAUGUCCCACAGACAUACAGCUGUCCGUCCGGAUGAGUUUGAAGA ((((.((-----(((((((...))).........------------------...(((.((((....(((----..(((((.....)))))...))).))))))))))))).)))).... ( -33.20) >DroEre_CAF1 166232 93 + 1 CG--------GAGUCCUGGAAGCCCAGAAAGGC-------------------AAAGGAACGGAAGCGGGCGGGCAAAUGUCCCACGGACAUACAGCUGUCCGUCCGGACGAGUUUGAAGA ((--------...((((....(((......)))-------------------..)))).))....((((((((((.((((((...)))))).....)))))))))).............. ( -33.00) >DroYak_CAF1 171147 116 + 1 CGGGGUCCUGGAGUCCUGGAAGCCCAGAAAGGCACGGAUGGGAACUGAAAGGAAAGGAACGGAAGCGGGC----GAAUGUCCCACGGACAUACAGCUGUCCGUCCGGACGAGUUUGAAGA (((....)))..((((.....(((......)))..(((((((..(((.........(..((....))..)----..((((((...)))))).)))...)))))))))))........... ( -36.80) >consensus CGGAGUC_____GUCCGGGAAGCCCAGAAAGCAA__________________AGAGGAACGGAAGCGGGC____GAAUGUCCCACGGACAUACAGCUGUCCGUCCGGAUGAGUUUGAAGA ............((((.((....))..............................(((.(((((((..........(((((.....)))))...))).)))))))))))........... (-20.60 = -20.76 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:15 2006