Locus 653

Sequence ID 3L_DroMel_CAF1
Location 1,946,040 – 1,946,139
Length 99
Max. P 0.935805
window997

overview

Window 7

Location 1,946,040 – 1,946,139
Length 99
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 76.73
Mean single sequence MFE -21.73
Consensus MFE -16.77
Energy contribution -17.24
Covariance contribution 0.47
Combinations/Pair 1.12
Mean z-score -1.54
Structure conservation index 0.77
SVM decision value 1.25
SVM RNA-class probability 0.935805
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1946040 99 - 23771897
UAUACAUUAUAUUA-----UAUU-------UGUUCAUAUUUCAGCCACUUCAAUCUGAUGCCCGAGGAGCUCUGUUCCUAUUUGCUGGAGCAGGUCUAUCAAAUCAUCAGC
..............-----....-------........................((((((...((..((..(((((((........)))))))..)).))....)))))). ( -20.10)
>DroSec_CAF1 13417 90 - 1
AUUAAUUCAUGU---------------------UCAUAUUUCAGCCACUUCAAUCUGAUGCCGGAGGAGCUCUGUUCCUAUUUGCUGGAGCAGGUCUAUCAAAUCAUCAGC
............---------------------.....................((((((...((..((..(((((((........)))))))..)).))....)))))). ( -21.20)
>DroSim_CAF1 13419 99 - 1
UUUAAUUCAUAUUA-----UAUU-------AACUCAUAUUUCAGCCACUUCAAUCUGAUGCCCGAGGAGCUCUGUUCCUAUUUGCUGGAGCAGGUCUAUCAAAUCAUCAGC
..............-----....-------........................((((((...((..((..(((((((........)))))))..)).))....)))))). ( -20.10)
>DroEre_CAF1 13507 97 - 1
UUUUAAUCACAUCAUCGUUUAU---------AUUU-----GCAGCCACUUCAAUCUGAUGCCCGAGGAGCUCUGCUCCUACUUGUUGGAGCAGGUCUAUCAAAUCAUCAGC
......................---------....-----..............((((((...((..((..(((((((........)))))))..)).))....)))))). ( -22.50)
>DroYak_CAF1 13430 111 - 1
UUUUAUUCAUUUCAUCGCUUAUUAAUUGAUUAUUUAUAUGGCAGCCACUUCAACCUGAUGCCCGAGGAGCUGUGUUCCUACUUGUUGGAGCAGGUCUACCAAAUCAUCAGC
................(((...(((........)))...)))............((((((.....((((.(.((((((........)))))).).)).))....)))))). ( -21.40)
>DroMoj_CAF1 14009 93 - 1
AUUAAUUAA-----------AUU-------GCUCUACAUUGCAGCAAUUUCAAUCAGCUGCCCGAAGAGCUGUGCUCUUAUUUGCUGGAGCAGGUGUAUCAAAUCAUCAGC
.........-----------..(-------((((((((..(((((...........)))))...((((((...))))))...)).)))))))((((........))))... ( -25.10)
>consensus
UUUAAUUCAUAU_A_____UAUU________AUUCAUAUUGCAGCCACUUCAAUCUGAUGCCCGAGGAGCUCUGUUCCUAUUUGCUGGAGCAGGUCUAUCAAAUCAUCAGC
......................................................((((((.......((.((((((((........)))))))).)).......)))))). (-16.77 = -17.24 +   0.47) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:41 2006