Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,946,040 – 1,946,139 |
Length | 99 |
Max. P | 0.935805 |
Location | 1,946,040 – 1,946,139 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 76.73 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -16.77 |
Energy contribution | -17.24 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.12 |
Mean z-score | -1.54 |
Structure conservation index | 0.77 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.935805 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1946040 99 - 23771897 UAUACAUUAUAUUA-----UAUU-------UGUUCAUAUUUCAGCCACUUCAAUCUGAUGCCCGAGGAGCUCUGUUCCUAUUUGCUGGAGCAGGUCUAUCAAAUCAUCAGC ..............-----....-------........................((((((...((..((..(((((((........)))))))..)).))....)))))). ( -20.10) >DroSec_CAF1 13417 90 - 1 AUUAAUUCAUGU---------------------UCAUAUUUCAGCCACUUCAAUCUGAUGCCGGAGGAGCUCUGUUCCUAUUUGCUGGAGCAGGUCUAUCAAAUCAUCAGC ............---------------------.....................((((((...((..((..(((((((........)))))))..)).))....)))))). ( -21.20) >DroSim_CAF1 13419 99 - 1 UUUAAUUCAUAUUA-----UAUU-------AACUCAUAUUUCAGCCACUUCAAUCUGAUGCCCGAGGAGCUCUGUUCCUAUUUGCUGGAGCAGGUCUAUCAAAUCAUCAGC ..............-----....-------........................((((((...((..((..(((((((........)))))))..)).))....)))))). ( -20.10) >DroEre_CAF1 13507 97 - 1 UUUUAAUCACAUCAUCGUUUAU---------AUUU-----GCAGCCACUUCAAUCUGAUGCCCGAGGAGCUCUGCUCCUACUUGUUGGAGCAGGUCUAUCAAAUCAUCAGC ......................---------....-----..............((((((...((..((..(((((((........)))))))..)).))....)))))). ( -22.50) >DroYak_CAF1 13430 111 - 1 UUUUAUUCAUUUCAUCGCUUAUUAAUUGAUUAUUUAUAUGGCAGCCACUUCAACCUGAUGCCCGAGGAGCUGUGUUCCUACUUGUUGGAGCAGGUCUACCAAAUCAUCAGC ................(((...(((........)))...)))............((((((.....((((.(.((((((........)))))).).)).))....)))))). ( -21.40) >DroMoj_CAF1 14009 93 - 1 AUUAAUUAA-----------AUU-------GCUCUACAUUGCAGCAAUUUCAAUCAGCUGCCCGAAGAGCUGUGCUCUUAUUUGCUGGAGCAGGUGUAUCAAAUCAUCAGC .........-----------..(-------((((((((..(((((...........)))))...((((((...))))))...)).)))))))((((........))))... ( -25.10) >consensus UUUAAUUCAUAU_A_____UAUU________AUUCAUAUUGCAGCCACUUCAAUCUGAUGCCCGAGGAGCUCUGUUCCUAUUUGCUGGAGCAGGUCUAUCAAAUCAUCAGC ......................................................((((((.......((.((((((((........)))))))).)).......)))))). (-16.77 = -17.24 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:41 2006