Locus 6524

Sequence ID 3L_DroMel_CAF1
Location 17,273,829 – 17,273,945
Length 116
Max. P 0.549490
window10574

overview

Window 4

Location 17,273,829 – 17,273,945
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.05
Mean single sequence MFE -26.76
Consensus MFE -22.58
Energy contribution -22.86
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -1.28
Structure conservation index 0.84
SVM decision value 0.03
SVM RNA-class probability 0.549490
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17273829 116 + 23771897
GCACUACGUAUUGACGUUAACAUUUUGCUCGGCACUUGUAACGUGGUGCAAUGCAAAAUG----CGAAACUGAAAAAUAAAACGCAAAACUGAAAGAAGUAAAUACCAGGCUCAAACUAC
((.((..(((((...(((..((((((((...(((((........)))))...))))))))----...)))..................(((......))).))))).))))......... ( -23.20)
>DroSec_CAF1 157330 116 + 1
GCACUACGUAUUGACGUUAACAUUUUGCUCGGCACUUGUAACGUGGUGCAAUGCAAAAUG----CGAAGCUGAAAAAUAAAACGCAAAACUGAAAGGAGUAAAUACCAGGCGCAAACUAC
((.((..(((((.(((((..((((((((...(((((........)))))...))))))))----...)))...................((....)).)).)))))..)).))....... ( -26.80)
>DroSim_CAF1 152399 116 + 1
GCACUACGUAUUGACGUUAAUAUUUUGCUCGGCACUUGUAACGUGGUGCAAUGCAAAAUG----CGAAGCUGAAAAAUAAAACGCAAAACUGAAAGGAGUAAAUACCAGGCGCAAACUAG
((.((..(((((.(((((..((((((((...(((((........)))))...))))))))----...)))...................((....)).)).)))))..)).))....... ( -25.00)
>DroEre_CAF1 160198 116 + 1
GCACUUCGUAUUGACGUUAACAUUUUGCUCGGCACUUGUAACGUGGUGCAAUGCAAAAUG----CGAAACUGAAGAAUGAAGCGCAGAACUGAAAGGAGUAAAUACCAGGCGCAAACUAC
((.(((.(((((.(((((..((((((((...(((((........)))))...))))))))----...)))...................((....)).)).))))).))).))....... ( -29.10)
>DroYak_CAF1 165112 120 + 1
GCACUUCGUAUUGACGUUAACAUUUUGCUCGGCACUUGUAACGUGGUGCAGUGCAAAAUACGUACGAAGCUGAAAAAUGAAACGCAAAACUGAAAGGAGUAAAUACCAGGCGCAAACUAC
((.(((.(((((.(((((..((((((..(((((..(((((.((((.(((...)))...))))))))).))))))))))).)))......((....)).)).))))).))).))....... ( -29.70)
>consensus
GCACUACGUAUUGACGUUAACAUUUUGCUCGGCACUUGUAACGUGGUGCAAUGCAAAAUG____CGAAGCUGAAAAAUAAAACGCAAAACUGAAAGGAGUAAAUACCAGGCGCAAACUAC
((.((..(((((..((....((((((((...(((((........)))))...))))))))....))......................(((......))).)))))..)).))....... (-22.58 = -22.86 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:41 2006