Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,273,250 – 17,273,352 |
Length | 102 |
Max. P | 0.611362 |
Location | 17,273,250 – 17,273,352 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -36.03 |
Consensus MFE | -23.49 |
Energy contribution | -23.69 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -2.65 |
Structure conservation index | 0.65 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17273250 102 - 23771897 UCUGAGCCAAUUUCUAUGG------------------CAGUGGCGGGGCAAUACGUAUGGCUGCUGCCAGAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCAGGCAAUUAAGA .....(((........(((------------------(((..((.(.((.....)).).))..))))))...(((..(((((.......(((....))))))))..))))))........ ( -33.91) >DroSec_CAF1 156751 102 - 1 UGUGAGCCAAUUUCUAUGG------------------CAGUGGCGGGGCAAUACGUUUGGCUGCUGCCAGAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCAGGCAAUUAAGA .....(((........(((------------------(((..((.((((.....)))).))..))))))...(((..(((((.......(((....))))))))..))))))........ ( -36.61) >DroSim_CAF1 151820 102 - 1 UGUGAGCCAAUUUCUAUGG------------------CAGUGGCGGGGCAAUACGUUUGGCUGCUGCCAGAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCAGGCAAUUAAGA .....(((........(((------------------(((..((.((((.....)))).))..))))))...(((..(((((.......(((....))))))))..))))))........ ( -36.61) >DroEre_CAF1 159617 102 - 1 UCUGAGCCAAUUUCUAUGG------------------CGGUGGCGGAGCCAUACGUAUUGCUGCUGCCAAAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCUGCCAAUUAAGA .....((((.......)))------------------)((..(((((((((((.((..(((...(((......)))..)))...)).)))))).)))(......).))..))........ ( -30.10) >DroYak_CAF1 164480 120 - 1 UCUGAGCCAAUUUCUAUGGCAGUGGCAGUGGCGGUGGCGGUGGCGGUGCAAUACGUAUUGCUGCUGCCAGAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCUGGCAAUUAAGA .....((((.......))))..((.((((.(((.((((((..(((((((.....)))))))..))))))...)))..(((((.......(((....))))))))..)))).))....... ( -42.91) >consensus UCUGAGCCAAUUUCUAUGG__________________CAGUGGCGGGGCAAUACGUAUGGCUGCUGCCAGAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCAGGCAAUUAAGA .....(((........(((..................(((..((.((((.....)))).))..))))))....((..(((((.......(((....))))))))..)).)))........ (-23.49 = -23.69 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:38 2006