Locus 652

Sequence ID 3L_DroMel_CAF1
Location 1,937,746 – 1,937,854
Length 108
Max. P 0.510459
window996

overview

Window 6

Location 1,937,746 – 1,937,854
Length 108
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.82
Mean single sequence MFE -39.59
Consensus MFE -21.64
Energy contribution -22.33
Covariance contribution 0.70
Combinations/Pair 1.32
Mean z-score -1.81
Structure conservation index 0.55
SVM decision value -0.05
SVM RNA-class probability 0.510459
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1937746 108 - 23771897
UCAGUUCUUCACCGUUGGCGUGGGACA------GACGACCGGACCCAACUACGUGGCCAGUUCCCAGGAGCUGGCCCUCUUCCAGCUGCUCGUUUCGUACGGGAUCUCGAGCAA
.............(((((..((((...------(.....)...)))).....(.(((((((((....))))))))))....)))))((((((..((......))...)))))). ( -37.90)
>DroSec_CAF1 5126 108 - 1
UCAGUUCUUCACCGUAGGCGUGGGACA------GUCCACGGGACCAAACUAUGUGGCCAGUUCCCAGGAGUUGGCUCUCUUCCAGCUGCUCGUUUCCUAUGGGAUCUCGAGCAA
..((((..((.((((.(((........------))).))))))...))))....(((((..((....))..)))))..........((((((..(((....)))...)))))). ( -34.90)
>DroEre_CAF1 5134 108 - 1
CCAGUUCUUCACCGUAGGUGUAGGCCA------GACCACCGGAAGCAACUAUGUGGCCAGUUCCCAGGAGCUGGCCCUCUUCCAGCUGCUCGUUUCCUACGGGAUCUCGAGCAA
...(..((.((((...)))).))..).------.......(((((.......(.(((((((((....)))))))))).)))))...((((((..(((....)))...)))))). ( -44.50)
>DroMoj_CAF1 5161 108 - 1
CCAGUUCUUUACGACAGGCGGCAGUCA------GACCAACGGCAGCAACUAUGUGGCCAGCAGCCAGGAGCUGGCUCUGUUCGAGCUGCUCGUCUCCUUUGGCAUAGCCAACAA
...(((......))).(((....((((------((...((((((((....((..(((((((........)))))))..))....))))).)))....))))))...)))..... ( -35.60)
>DroAna_CAF1 5289 108 - 1
UCAGUUCUUCACAGUUGGCAUCGCCCA------GACCACCGGUCCCUCCUACGUGGCCAGCUCCCAGGAGCUGGCUCUGUUCCAGCUGCUCGUUUCCUAUGGCAUUUCCAGCAA
.............(((((....(((.(------(...((.(((..((...(((.(((((((((....))))))))).)))...))..))).))...))..)))....))))).. ( -34.80)
>DroPer_CAF1 5202 114 - 1
UCAGUUCUUCACCGUGGGUUUGGGCCAGACCCAGACCACGGGCUCCAGCUACGUGGCCAGCUCUCAGGAGCUGGCACUUUUUCAGCUGCUCGUCUCCUAUGGCAUUUCGAGCAA
...........((((((.((((((.....))))))))))))(((((((((.....((((((((....))))))))........)))))...(((......))).....)))).. ( -49.82)
>consensus
UCAGUUCUUCACCGUAGGCGUGGGCCA______GACCACCGGACCCAACUACGUGGCCAGCUCCCAGGAGCUGGCUCUCUUCCAGCUGCUCGUUUCCUAUGGCAUCUCGAGCAA
...((((....(((((((......................((......))....(((((((((....)))))))))...................)))))))......)))).. (-21.64 = -22.33 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:40 2006