Locus 6517

Sequence ID 3L_DroMel_CAF1
Location 17,270,668 – 17,270,779
Length 111
Max. P 0.921971
window10557

overview

Window 7

Location 17,270,668 – 17,270,779
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.82
Mean single sequence MFE -21.78
Consensus MFE -21.04
Energy contribution -20.80
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.34
Structure conservation index 0.97
SVM decision value 1.14
SVM RNA-class probability 0.921971
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17270668 111 + 23771897
UUAAUGCGCUCGUAUGCCAAUGUACAUAAUGCAUAAUUAAUUUGGCUCGACAUGCACAACCUGUUGAGCCGCAAAAGCACUCACCUUGGCGUCCUUCACUCCACCAUAACC---------
...((((....))))(((((.((....................(((((((((.(.....).)))))))))((....))....)).))))).....................--------- ( -25.50)
>DroSec_CAF1 154114 111 + 1
UUAAUGCGCUCGUAUGCCAAUGUACAUAAUGCAUAAUUAAUUUGGCCCGACAUGCACAACCUGUUGAGCCGCAAAAGCACUCACCUUGGCGUCCUUCACUCCACCCUUACC---------
...((((....))))(((((.((....................(((.(((((.(.....).))))).)))((....))....)).))))).....................--------- ( -20.70)
>DroSim_CAF1 149140 111 + 1
UUAAUGCGCUCGUAUGCCAAUGUACAUAAUGCAUAAUUAAUUUGGCCCGACAUGCACAACCUGUUGAGCCGCAAAAGCACUCACCUUGGCGUCCUUCACUCCACCCUUACC---------
...((((....))))(((((.((....................(((.(((((.(.....).))))).)))((....))....)).))))).....................--------- ( -20.70)
>DroEre_CAF1 156939 120 + 1
UUAAUGCUCUCGUAUGCCAAUGUACAUAAUGCAUAAUUAAUUUGGCCCAACAUGCACAACCUGUUGAGCCGCAAAAGCACUCACCUUGGCGUCCUUCACUCCACCUCCACCUGCUCCUCC
...........(.(((((((.((....................(((.(((((.(.....).))))).)))((....))....)).))))))).).......................... ( -21.00)
>DroYak_CAF1 161744 120 + 1
UUAAUGCGCUCGUAUGCCAAUGUACAUAAUGCAUAAUUAAUUUGGCCCAACAUGCACAACCUGUUGAGCCGCAAAAGCACUCACCUUGGCGUCCUUCACUCCAUCUCAACCUCCACCUCC
...((((....))))(((((.((....................(((.(((((.(.....).))))).)))((....))....)).))))).............................. ( -21.00)
>consensus
UUAAUGCGCUCGUAUGCCAAUGUACAUAAUGCAUAAUUAAUUUGGCCCGACAUGCACAACCUGUUGAGCCGCAAAAGCACUCACCUUGGCGUCCUUCACUCCACCCUAACC_________
...........(.(((((((.((....................(((.(((((.(.....).))))).)))((....))....)).))))))).).......................... (-21.04 = -20.80 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:24 2006