Locus 6514

Sequence ID 3L_DroMel_CAF1
Location 17,268,986 – 17,269,105
Length 119
Max. P 0.798406
window10550

overview

Window 0

Location 17,268,986 – 17,269,105
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.47
Mean single sequence MFE -32.68
Consensus MFE -24.36
Energy contribution -26.43
Covariance contribution 2.06
Combinations/Pair 1.03
Mean z-score -1.92
Structure conservation index 0.75
SVM decision value 0.61
SVM RNA-class probability 0.798406
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17268986 119 - 23771897
UCCCCCUAGCCUACCCUUCAUCCGCAUCAUUCGUGCAUUUUAGUUCCCGGCUUUCUUUUUUGCUUUUAAUUUGCACCACGCCGGGAAACUGUUGCAGUUC-CCUGGCAGCGGAAGUGUUG
....................(((((.......(((((..((((.....(((..........))).))))..)))))...((((((.(((((...))))).-)))))).)))))....... ( -34.80)
>DroSec_CAF1 152413 117 - 1
CCCA--UACCCUGCCCUUCAUCCGCAUCAUUCGUGCAUUUUAGUUGCCGGCUUUAUU-UUUGCUUUUAAUUUGCACCACGCCGGGAAACUGUUGCAGUUCCCCUGGCAGCGGAAGUGUUG
....--..............(((((.......(((((..((((..((..........-...))..))))..)))))...((((((.(((((...)))))..)))))).)))))....... ( -34.42)
>DroSim_CAF1 147460 120 - 1
CCCCUAUCCCCUGCCCAUCAUCCGCAUCAUUCGUGCAUUUUAGUUGCCGGCUUUAUUUUUUGCUUUUAAUUUGCACCACGCCGGGAAACUGUUGCAGUUCUCCUGGCAGCGGAAGUGUUG
...............(((..(((((.......(((((..((((..((..(........)..))..))))..)))))...((((((((((((...))))).))))))).))))).)))... ( -36.90)
>DroEre_CAF1 155355 110 - 1
CCCC---------CCCUUCAGCCGCAUCCUUCUUGGAUUUUAGUUGCAGGUUUUAUUUUUUGCUUUUAAUUUGCACCACGCCGGGAAACGGUUGCAGUUCUCC-UCCAGCGGAAGUGUUG
....---------.....((((.((.(((...(((((..((((..(((((........)))))..)))).(((((....((((.....)))))))))......-))))).))).)))))) ( -24.60)
>consensus
CCCC__UACCCUGCCCUUCAUCCGCAUCAUUCGUGCAUUUUAGUUGCCGGCUUUAUUUUUUGCUUUUAAUUUGCACCACGCCGGGAAACUGUUGCAGUUCUCCUGGCAGCGGAAGUGUUG
....................(((((.......(((((..((((.....(((..........))).))))..)))))...((((((((((((...))))).))))))).)))))....... (-24.36 = -26.43 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:17 2006