Locus 651

Sequence ID 3L_DroMel_CAF1
Location 1,932,352 – 1,932,472
Length 120
Max. P 0.577959
window995

overview

Window 5

Location 1,932,352 – 1,932,472
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.61
Mean single sequence MFE -32.94
Consensus MFE -14.42
Energy contribution -13.62
Covariance contribution -0.80
Combinations/Pair 1.33
Mean z-score -2.12
Structure conservation index 0.44
SVM decision value 0.09
SVM RNA-class probability 0.577959
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1932352 120 + 23771897
ACUUGGCCACCAGGUUUCAGGAAAAGAAUGAUAAACUCGAAAGGGAGUUGGACCAUUGCAGGCAAGACGCCAAGCAAUGGGAAGAAAGACUGGAGCAACUGGAAAUGCAACUCAACAGCA
.....((..(((((((((((...............(((....))).......(((((((.(((.....)))..))))))).........)))))))..))))....))............ ( -33.80)
>DroPse_CAF1 63907 120 + 1
GCUUGGCUACCAAGUUCCAAGAGAGGCACGAGAAGAUGGAGGCAGAUCUGGACAGGCACCAGCAAGAAGCCAAAGAAUGGGAUGAAAAGUUGGAGCAACUGGAAAUGCAACUCCAUGGCA
.....(((.....((.((......)).))......(((((((((..((..(....((.(((((......((........)).......))))).))..)..))..)))..))))))))). ( -31.32)
>DroEre_CAF1 56411 120 + 1
ACUUGGCCACCAAGUUCCAGGAAAAGAAUGAUAAACUCGAAAAAGAGUUGGACCAUUGCAGGCACGAUGCCAAUCAAUGGGAAGAAAAACUGGAGCAACUGGAAAUGCAACUCAACAGCA
.....((..(((.(((((((.............(((((......)))))...((((((..(((.....)))...)))))).........)))))))...)))....))............ ( -31.10)
>DroYak_CAF1 55969 120 + 1
ACUUGGCCACCAAGUUCCAGGAAAAGAAUGAUAAACUCGAAAGAGAGUUGGACCAUUGCAGGCACGAUGCCAGGCAAUGGGACGAAAGAAUGGAGCAACUGGAAAUGCAACUAAACAGCA
.(((((...)))))((((((...............(((....)))..(((..(((((((.(((.....)))..)))))))..))).............)))))).(((.........))) ( -38.40)
>DroAna_CAF1 58502 120 + 1
ACCUGGCCACCAAGUUCGAAGAGAAGAACGAAAAACUGGAGGGAGAGGUUGACCAUCUUAGGCAGGAUGCCAAGGAGUGGGAACACAAGAUGGAACUAAUGGAAGCGCAACUCCACGGCA
.....(((.....((((........)))).......(((((.....((((..(((((((.(((.....))).....(((....))))))))))))))...(....)....))))).))). ( -35.50)
>DroPer_CAF1 63373 120 + 1
GCUUAGCCACCAAGUUCCAAGAGAGGCACGAGAAGAUGGAGGCAGAUCUGGACAGGCACCAGCAAGAAGCCAAAGAAUGGGAUGAAAAGUUUGAGCAACUGGAAAUGCAACUCCAUGGCA
.....(((.....((.((......)).))......(((((((((..((..(....((.(.(((......((........)).......))).).))..)..))..)))..))))))))). ( -27.52)
>consensus
ACUUGGCCACCAAGUUCCAAGAAAAGAACGAUAAACUCGAAAGAGAGUUGGACCAUCGCAGGCAAGAUGCCAAGCAAUGGGAAGAAAAAAUGGAGCAACUGGAAAUGCAACUCAACAGCA
.....((..(((.(((((((.....((......((((........))))......))...(((.....)))..................)))))))...)))....))............ (-14.42 = -13.62 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:39 2006