| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,264,633 – 17,264,738 |
| Length | 105 |
| Max. P | 0.579404 |
| Location | 17,264,633 – 17,264,738 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 84.87 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -16.13 |
| Energy contribution | -16.13 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17264633 105 + 23771897 --UUUAUUAAAGAGGCAUGCGAUAUGCAUUUGAAUUUUGUUAGAGACUUUGAAGUCUUUAACUAAGUACUAAAAACUAAAUAGGCGACACU------------AUAUAAAUUUUGACCA --....(((((...(((((...))))).)))))((((.((((((((((....)))))))))).))))..(((((..((.((((......))------------)).))..))))).... ( -19.60) >DroSec_CAF1 148168 119 + 1 GUUUUGUUAAAAAGGCAUGCGAUAUGCAUUUGAAUUUUGUUAGAGACUUUCAAGUCUUUAACUAAAUACAAAAAACUAAAUAAACCACACUAAAAUCAACACCAUAUAUAUUUUGACCA .....(((((((..(((((...))))).((((.((((.((((((((((....)))))))))).)))).))))......................................))))))).. ( -22.10) >DroSim_CAF1 143183 119 + 1 GUUUUGUUAAAGAGGCAUGCGAUAUGCUUUUGAAUUUUGUUAAAAACUUUGAAGUCUUUAACUAAAUACUAAAAACUAAAUAAACCACACUUAAAUCAACACAAUAUAUAUUUUGACCA (((((.....(((((((((...)))))))))..((((.((((((.(((....))).)))))).))))....))))).........................(((........))).... ( -14.40) >consensus GUUUUGUUAAAGAGGCAUGCGAUAUGCAUUUGAAUUUUGUUAGAGACUUUGAAGUCUUUAACUAAAUACUAAAAACUAAAUAAACCACACU_AAAUCAACAC_AUAUAUAUUUUGACCA .....(((((((..(((((...)))))......((((.((((((((((....)))))))))).))))...........................................))))))).. (-16.13 = -16.13 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:55 2006