Locus 6504

Sequence ID 3L_DroMel_CAF1
Location 17,263,589 – 17,263,709
Length 120
Max. P 0.653813
window10519

overview

Window 9

Location 17,263,589 – 17,263,709
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.17
Mean single sequence MFE -28.36
Consensus MFE -23.82
Energy contribution -24.82
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.84
SVM decision value 0.25
SVM RNA-class probability 0.653813
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17263589 120 - 23771897
UCAUUCCAAUCGUCUUCUACUUUGCUUUGAGUCUCUUUGUACUUCAAGUGUGCAGCGAAAGGAAGGGACUUCAAAUUGCACUUUUCAUUAAUCAGAAAACCGGAAAUAAGUCAAAGUCGA
.........(((.(((..((((((((((((((((((((((((.......))))..(....))))))))).)))))..))).(((((........)))))........))))..))).))) ( -27.90)
>DroSec_CAF1 147123 120 - 1
UCAUUCCAAUCGUCUUCUACUUUGCUUUGAGUCUCUUUGUACUUCAAGUGUGCAGCGAAAGGAAGGGACUUCAAAUUGCACUUUUCAUUUAUCAGAAAACCGGAAAUAAGUCAAAGUCGA
.........(((.(((..((((((((((((((((((((((((.......))))..(....))))))))).)))))..))).(((((........)))))........))))..))).))) ( -27.90)
>DroSim_CAF1 142148 119 - 1
UCAUUCCAAUCGUCUUCUACUUUGCUUUGAGUCUCUUUGUACUUCAAGUGUGCAGCGAAAGGAAGGGACUUCAAAUUGCAUUUUUCAUUAAUCAGAA-ACCGGAAAUAAGUCAAAGUCGA
.........(((.(((..((((((((((((((((((((((((.......))))..(....))))))))).)))))..)))..((((........)))-)........))))..))).))) ( -27.20)
>DroEre_CAF1 150286 120 - 1
UCAUUCCAAUCGUCUUCUACUUUGCUUUGAGUCUCUUUGUACUUCAAGUGCGCAGCGAAAGCAAGGGACUUCAAAUUGCACUUUUCAUUAAUCAGAAAACCGGAAAUAAGUCGAAGUCGA
.........(((.((((.(((((((((((((((((((.((((.....))))...((....))))))))).)))))..))).(((((........)))))........)))).)))).))) ( -33.00)
>DroYak_CAF1 154620 120 - 1
UCAUUCCAAUCGUCUUCUACUUUGCUUUGAGUCUCUUUGUACUUCAAGUGCGCUGCGAAAGGAAGGGACUUCAAAUUGCACUUUUCAUUAAUCAGAAAACCGGAAAUAAGCCAAAGUCGA
...((((...............((((((((((((((((((((.....))))....(....))))))))).)))))..))).(((((........)))))..))))............... ( -25.80)
>consensus
UCAUUCCAAUCGUCUUCUACUUUGCUUUGAGUCUCUUUGUACUUCAAGUGUGCAGCGAAAGGAAGGGACUUCAAAUUGCACUUUUCAUUAAUCAGAAAACCGGAAAUAAGUCAAAGUCGA
.........(((.(((..((((((((((((((((((((((((.......))))..(....))))))))).)))))..))).(((((........)))))........))))..))).))) (-23.82 = -24.82 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:48 2006