Locus 6501

Sequence ID 3L_DroMel_CAF1
Location 17,262,564 – 17,262,678
Length 114
Max. P 0.997687
window10506

overview

Window 6

Location 17,262,564 – 17,262,678
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.88
Mean single sequence MFE -38.50
Consensus MFE -34.28
Energy contribution -34.00
Covariance contribution -0.28
Combinations/Pair 1.09
Mean z-score -2.23
Structure conservation index 0.89
SVM decision value 2.91
SVM RNA-class probability 0.997687
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17262564 114 - 23771897
GAAAUGGGUUGAGCUCGGGCCGAGAACAACUCGCAUUCGAAUGAAGAUGGA------AAUGAAAAUGUGUGGGACCCGCACGUUCUGAUUCCGUUGAUUCAGCGUCAAAGUCAGCCCUAA
.....(((((((.((..(((((((.....)))).....((((...((((((------(.(.(.(((((((((...))))))))).).)))))))).))))...)))..)))))))))... ( -38.50)
>DroSec_CAF1 146142 114 - 1
GAAAUGGGUUGAGCUCGGGCCGAGAACAACUCGCAUUCGAAUGAAGAUGGA------AAUGAAAAUGUGUGGGACCCGCACGUUCUGAUUCCGUUGAUUUAGCGUCAAAGUCAGCCCUAA
.....(((((((.((..(((.(((.....)))((.(((....)))((((((------(.(.(.(((((((((...))))))))).).))))))))......)))))..)))))))))... ( -36.60)
>DroSim_CAF1 141153 114 - 1
GAAAUGGGUUGAGCCCGGGCCGAGAACAACUCGCAUUCGAAUGAAGAUGGA------AAUGAAAAUGUGUGGGACCCGCACGUUCUGAUUCCGUUGAUUCAGCGUCAAAGUCAGCCCUAA
.....(((.....)))((((((((.....)))).....((.((((((((((------(.(.(.(((((((((...))))))))).).))))))))..))))...)).......))))... ( -36.20)
>DroEre_CAF1 149237 114 - 1
GAAAUGGGUUGAGCUCGGGCCGAGGACAACUCGCAUCCGAAUGAAGAUGGA------AAUGAAAAUGUGUGGGACCCGCACGUUCUGAAUCCGUUGAUUCAGCGUCAAAGUCAGCCCUAA
.....(((((((..(((((.((((.....))))..))))).....((((..------......(((((((((...)))))))))(((((((....)))))))))))....)))))))... ( -42.10)
>DroYak_CAF1 153546 120 - 1
GAAAUGGGUUGAGCUUGGGCCGAGAACAACUCGCAUUCGAAUGAAGAUGGAAAUGGAAAUGAAAAUGUGUGGGACCCGCACGUUCUGAUUCCGUUGAUUCAGCGUCAAAGUCAGCCCUAA
.....(((((((.(((.(((((((.....)))).....((((...(((((((.(((((((....))((((((...)))))).))))).))))))).))))...))).))))))))))... ( -39.10)
>consensus
GAAAUGGGUUGAGCUCGGGCCGAGAACAACUCGCAUUCGAAUGAAGAUGGA______AAUGAAAAUGUGUGGGACCCGCACGUUCUGAUUCCGUUGAUUCAGCGUCAAAGUCAGCCCUAA
.....(((((((..(((((.((((.....))))..))))).....((((..............(((((((((...)))))))))((((.((....)).))))))))....)))))))... (-34.28 = -34.00 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:35 2006