Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,262,366 – 17,262,484 |
Length | 118 |
Max. P | 0.554388 |
Location | 17,262,366 – 17,262,484 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.12 |
Mean single sequence MFE | -32.25 |
Consensus MFE | -25.91 |
Energy contribution | -26.19 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.38 |
Structure conservation index | 0.80 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554388 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17262366 118 + 23771897 UCUGCAAGGGAUGCCCCCUUGUGCUC--UCCCAAACUUUAUCUGCAAUCAGUGGCCUGCAGAAUUUCACACAUGGCCACAUGGUUCGAUACGUUUGAUUAAUGCCCUCGCACUGAGUGCA ...(((((((.....)))))))((.(--((.(((((..((((.(.(((((((((((.................)))))).)))))))))).))))).....(((....)))..))).)). ( -37.63) >DroSec_CAF1 145944 118 + 1 UCUGCAAAGGAUGCCCCCUUGCGCUG--CCCCAAACUUUAUCUGCAAUCAGUGGCCUGCAGAAUUUCACACAUGGCCACAUGGUUCGAUACGUUUGAUUAAUGCCCUCGCACUGAGUGCA ......((((......))))(((((.--...(((((..((((.(.(((((((((((.................)))))).)))))))))).))))).....(((....)))...))))). ( -31.03) >DroSim_CAF1 140955 118 + 1 UCUGCAAAGGAUGCCCCCUUGUGCUG--CCCCAAACUUUAUCUGCAAUCAGUGGCCUGCAGAAUUUCACACAUGGCCACAUGGUUCGAUACGUUUGAUUAAUGCCCUCGCACUGAGUGCA ...(((((((......)))).)))..--...(((((..((((.(.(((((((((((.................)))))).)))))))))).))))).....(((.(((.....))).))) ( -30.93) >DroEre_CAF1 149042 115 + 1 UCUGCGGAGGAUAGCCUCC-----UGCCCCCCAAACUUUAUCUGCAAUCAGUGGCCUGCACAAUUUCACACAUGGCCACAUGGUUCGAUACGUUUGAUUAAUGCCCUCGCACUGAGUGCA ...(((((((....)))))-----.))....(((((..((((.(.(((((((((((.................)))))).)))))))))).))))).....(((.(((.....))).))) ( -34.33) >DroYak_CAF1 153346 120 + 1 UCUGCGCAGGACACCCCCUAGAAGUACCCCCAAAACUUUAUCUGCAAUCAGUGGCCUGCACAAUUUCACACAUGGCCACAUGGUUCGAUACGUUUGAUUAAUGCCCUCGCACUGAGUGCA ...(((((((......)))...........((((....((((.(.(((((((((((.................)))))).))))))))))..)))).(((.(((....))).))))))). ( -27.33) >consensus UCUGCAAAGGAUGCCCCCUUGUGCUG__CCCCAAACUUUAUCUGCAAUCAGUGGCCUGCAGAAUUUCACACAUGGCCACAUGGUUCGAUACGUUUGAUUAAUGCCCUCGCACUGAGUGCA ...(((((((......))))...........(((((..((((.(.(((((((((((.................)))))).)))))))))).))))).....)))....((((...)))). (-25.91 = -26.19 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:34 2006