| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,930,857 – 1,930,959 |
| Length | 102 |
| Max. P | 0.607858 |
| Location | 1,930,857 – 1,930,959 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 79.09 |
| Mean single sequence MFE | -34.74 |
| Consensus MFE | -19.50 |
| Energy contribution | -20.83 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1930857 102 - 23771897 UUGGCGGUUUGCCGGCCAUUCUUCUGAAAGCGGAUACCAUUUACCGCAUUGGGAGGCAGAAGGGCCUGGAAAUAAGCAUCGCCGAUGAGGUAAAU---UGGCCCU ..(((.....)))(((((....((((....))))....(((((((.((((((.((((......)))).((........)).)))))).)))))))---))))).. ( -34.70) >DroSec_CAF1 52993 102 - 1 UUGGCGGUUUGCCGGCCAUUCUCCUGAAACCGGAUACAAUUUACCGCAUUGGGAGGCAGAAAGGCCUGGAAAUAAGCAUCGCCGAUGAGGUAAAU---UGGCCCU ..(((......((((...(((....))).))))...(((((((((.((((((.((((......)))).((........)).)))))).)))))))---))))).. ( -36.10) >DroSim_CAF1 53405 102 - 1 UUGGCGGUUUGCCGGCCAUUCUCCUGAAGCCGGAUACAAUUUACCGCAUUGGGAGGCAGAAAGGCCUGGAAAUAAGCAUCGCCGAUGAGGUAAAU---UGGCCCU ..(((......(((((..(((....))))))))...(((((((((.((((((.((((......)))).((........)).)))))).)))))))---))))).. ( -39.60) >DroEre_CAF1 54881 102 - 1 UUGGAGAUCUGCCGGCCGUUCUUCUGGAGCCUGAUAUAAUAUACCGCAUUGGAAGGAAGAAGGGCCUGGAAAUCAGCAUCGCCGACGAGGUAAAU---UUGCCUU ((((.((((((((((((.(((((((....((...................))..))))))).)))).))....))).))).)))).((((((...---.)))))) ( -33.81) >DroWil_CAF1 79320 102 - 1 UUGCCGGGAAAAAGGCGGU---UCUGGAGCCAGAUGUCAUUUACCGCAUUGGCAGAAAACCAGGAUUGGAGUUCUUUAUACCCGAUGAGGUAGGUAAAGGGCUUU ..(((........)))(((---(((((.(((((.(((........))))))))......))))))))((((((((((((..((.....))...)))))))))))) ( -31.80) >DroYak_CAF1 54432 102 - 1 UUGGCGGUCUGCCGGCCAUUCUCUUGGAACCGGAUACAAUAUACCGUAUUGGAAGGAAGAAGGGCCUGGAAAUCAGCAUCGCCGAUGAGGUAAAU---UGUCCAU (((((((((((((((((.(((((((....(((.((((........))))))).))).)))).)))).))....))).))))))))...((.....---...)).. ( -32.40) >consensus UUGGCGGUUUGCCGGCCAUUCUCCUGAAACCGGAUACAAUUUACCGCAUUGGGAGGAAGAAAGGCCUGGAAAUAAGCAUCGCCGAUGAGGUAAAU___UGGCCCU ..(((.....)))(((((.....(((....))).....(((((((.((((((.(((........))).((........)).)))))).)))))))...))))).. (-19.50 = -20.83 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:38 2006